Difference between revisions of "HISHP-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** cob(I)yrinic acid a,c-diami...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BTUR2-RXN BTUR2-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** cob(I)yrinic acid a,c-diamide adenosyltransferase
+
** nucleoside diphosphate kinase
 +
** Nucleoside diphosphate kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.17 EC-2.5.1.17]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[COBINAMIDE]][c] '''=>''' 1 [[ADENOSYLCOBINAMIDE]][c] '''+''' 1 [[P3I]][c]
+
** 1 [[DCDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DCTP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 cobinamide[c] '''=>''' 1 adenosylcobinamide[c] '''+''' 1 PPPi[c]
+
** 1 dCDP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 dCTP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-06_010830]]
+
* [[Ec-04_001140]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
 
***GO-TERM
 
***GO-TERM
 +
** [[pantograph]]-[[aragem]]
 +
* [[Ec-11_005170]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
* [[Ec-03_001380]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
* [[Ec-26_003930]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
* [[Ec-07_000140]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
* [[Ec-22_003280]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
* [[Ec-11_004330]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
** [[pantograph]]-[[aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[COBALSYN-PWY]], adenosylcobalamin salvage from cobinamide I: [http://metacyc.org/META/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY]
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6269]], adenosylcobalamin salvage from cobinamide II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6269 PWY-6269]
+
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''14''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-aragem]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14725 14725]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27678 27678]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07268 R07268]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02326 R02326]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=cob(I)yrinic acid a,c-diamide adenosyltransferase}}
+
{{#set: common name=nucleoside diphosphate kinase}}
−
{{#set: ec number=EC-2.5.1.17}}
+
{{#set: common name=Nucleoside diphosphate kinase}}
−
{{#set: gene associated=Ec-06_010830}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: in pathway=COBALSYN-PWY|PWY-6269}}
+
{{#set: gene associated=Ec-04_001140|Ec-11_005170|Ec-03_001380|Ec-26_003930|Ec-07_000140|Ec-22_003280|Ec-11_004330}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7197|PWY0-166|PWY-6545}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 21:10, 17 March 2018

Reaction DCDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside diphosphate kinase
    • Nucleoside diphosphate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dCDP[c] + 1 ATP[c] => 1 ADP[c] + 1 dCTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 14 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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