Difference between revisions of "RXN1G-1437"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DETHIOBIOTIN-SYN-RXN DETHIOBIOTIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Bifun...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DETHIOBIOTIN-SYN-RXN DETHIOBIOTIN-SYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
+
** Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103]
+
** [http://enzyme.expasy.org/EC/6.3.3.3 EC-6.3.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[FARNESYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-465]][c]
+
** 1 [[DIAMINONONANOATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[DETHIOBIOTIN]][c] '''+''' 1 [[ADP]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 presqualene diphosphate[c]
+
** 1 7,8-diaminopelargonate[c] '''+''' 1 CO2[c] '''+''' 1 ATP[c] '''=>''' 1 dethiobiotin[c] '''+''' 1 ADP[c] '''+''' 3 H+[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-11_001030]]
+
* [[Ec-01_005750]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
−
** '''1''' reactions found over '''14''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767]
+
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105]
+
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15805 15805]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03182 R03182]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O69445 O69445]
+
** [http://www.uniprot.org/uniprot/Q9JV95 Q9JV95]
−
** [http://www.uniprot.org/uniprot/P36596 P36596]
+
** [http://www.uniprot.org/uniprot/Q9PIJ1 Q9PIJ1]
−
** [http://www.uniprot.org/uniprot/O65688 O65688]
+
** [http://www.uniprot.org/uniprot/P46397 P46397]
−
** [http://www.uniprot.org/uniprot/O23118 O23118]
+
** [http://www.uniprot.org/uniprot/P22818 P22818]
−
** [http://www.uniprot.org/uniprot/O22107 O22107]
+
** [http://www.uniprot.org/uniprot/P13000 P13000]
−
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
+
−
** [http://www.uniprot.org/uniprot/O22106 O22106]
+
−
** [http://www.uniprot.org/uniprot/P53800 P53800]
+
−
** [http://www.uniprot.org/uniprot/P53799 P53799]
+
−
** [http://www.uniprot.org/uniprot/P53798 P53798]
+
−
** [http://www.uniprot.org/uniprot/P29704 P29704]
+
−
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
+
−
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
+
−
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
+
−
** [http://www.uniprot.org/uniprot/P37268 P37268]
+
−
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}}
+
{{#set: common name=Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase}}
−
{{#set: ec number=EC-2.5.1.103}}
+
{{#set: ec number=EC-6.3.3.3}}
−
{{#set: gene associated=Ec-11_001030}}
+
{{#set: gene associated=Ec-01_005750}}
−
{{#set: in pathway=PWY-7072|PWY-6767|PWY-5875|PWY-6105}}
+
{{#set: in pathway=PWY0-1507|PWY-7380}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 21:31, 17 March 2018

Reaction DETHIOBIOTIN-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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