Difference between revisions of "Ec-16 001470"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] == * direction: ** REVERSIBLE * common name: ** isocitrate lyase...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5224 RXN0-5224] == * direction: ** REVERSIBLE * common name: ** Carbonic anhydrase ** carbonat...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5224 RXN0-5224] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** isocitrate lyase
+
** Carbonic anhydrase
 +
** carbonate dehydratase
 +
** gamma carbonic anhydrase
 +
** Trimeric LpxA-like
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.3.1 EC-4.1.3.1]
+
** [http://enzyme.expasy.org/EC/4.2.1.1 EC-4.2.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[HCO3]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-threo-isocitrate[c] '''<=>''' 1 glyoxylate[c] '''+''' 1 succinate[c]
+
** 1 H+[c] '''+''' 1 hydrogen carbonate[c] '''<=>''' 1 CO2[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-12_007550]]
+
* [[Ec-05_001290]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
 
***GO-TERM
 
***GO-TERM
 +
* [[Ec-10_002770]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-27_005680]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
* [[Ec-07_004610]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-16_004700]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
* [[Ec-22_001150]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-06_004120]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-03_001960]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
+
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4429 PWYQT-4429]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[CYANCAT-PWY]], cyanate degradation: [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13245 13245]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10748 10748]
−
* PIR:
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
+
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P28467 P28467]
+
−
** [http://www.uniprot.org/uniprot/P42449 P42449]
+
−
** [http://www.uniprot.org/uniprot/P20699 P20699]
+
−
** [http://www.uniprot.org/uniprot/O13439 O13439]
+
−
** [http://www.uniprot.org/uniprot/P28299 P28299]
+
−
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
+
−
** [http://www.uniprot.org/uniprot/P46831 P46831]
+
−
** [http://www.uniprot.org/uniprot/O24588 O24588]
+
−
** [http://www.uniprot.org/uniprot/P49297 P49297]
+
−
** [http://www.uniprot.org/uniprot/P45456 P45456]
+
−
** [http://www.uniprot.org/uniprot/P45457 P45457]
+
−
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
+
−
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
+
−
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
+
−
** [http://www.uniprot.org/uniprot/P28240 P28240]
+
−
** [http://www.uniprot.org/uniprot/P20014 P20014]
+
−
** [http://www.uniprot.org/uniprot/P17069 P17069]
+
−
** [http://www.uniprot.org/uniprot/P15479 P15479]
+
−
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
+
−
** [http://www.uniprot.org/uniprot/P25248 P25248]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=isocitrate lyase}}
+
{{#set: common name=Carbonic anhydrase}}
−
{{#set: ec number=EC-4.1.3.1}}
+
{{#set: common name=carbonate dehydratase}}
−
{{#set: gene associated=Ec-12_007550}}
+
{{#set: common name=gamma carbonic anhydrase}}
−
{{#set: in pathway=P105-PWY|GLYOXYLATE-BYPASS|PWY-6969}}
+
{{#set: common name=Trimeric LpxA-like}}
 +
{{#set: ec number=EC-4.2.1.1}}
 +
{{#set: gene associated=Ec-05_001290|Ec-10_002770|Ec-27_005680|Ec-07_004610|Ec-16_004700|Ec-22_001150|Ec-06_004120|Ec-03_001960}}
 +
{{#set: in pathway=PWY-241|PWYQT-4429|PWY-7117|PWY-7115|PWY-6142|CYANCAT-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 21:31, 17 March 2018

Reaction RXN0-5224

  • direction:
    • REVERSIBLE
  • common name:
    • Carbonic anhydrase
    • carbonate dehydratase
    • gamma carbonic anhydrase
    • Trimeric LpxA-like
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 hydrogen carbonate[c] <=> 1 CO2[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 4 reactions found over 5 reactions in the full pathway
  • PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic): PWYQT-4429
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 14 reactions in the full pathway
  • CYANCAT-PWY, cyanate degradation: CYANCAT-PWY
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-16_001470&oldid=13356"