Difference between revisions of "PORPHOBILSYNTH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14776 RXN-14776] == * direction: ** LEFT-TO-RIGHT * common name: ** NAD(P)-binding domain * ec...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase/UMP-CMP ki...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14776 RXN-14776] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** NAD(P)-binding domain
+
** Adenylate kinase/UMP-CMP kinase
 +
** Aspartate/glutamate/uridylate kinase
 +
** aspartate/glutamate/uridylate kinase
 +
** cytidylate kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.34 EC-1.3.1.34]
+
** [http://enzyme.expasy.org/EC/2.7.4.22 EC-2.7.4.22]
 +
** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-15654]][c] '''=>''' 1 [[CPD-15655]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 2-trans, 4-cis-undecadienoyl-CoA[c] '''=>''' 1 3-trans-undecenoyl-CoA[c] '''+''' 1 NADP+[c]
+
** 1 ATP[c] '''+''' 1 UMP[c] '''=>''' 1 UDP[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-16_003950]]
+
* [[Ec-16_005090]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
 +
* [[Ec-24_000610]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-06_003080]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
** [[pantograph]]-[[aragem]]
 +
* [[Ec-14_004920]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-27_003730]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-07_003680]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7337]], 10-cis-heptadecenoyl-CoA degradation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7337 PWY-7337]
+
* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
−
** '''3''' reactions found over '''12''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-aragem]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24400 24400]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00158 R00158]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=NAD(P)-binding domain}}
+
{{#set: common name=Adenylate kinase/UMP-CMP kinase}}
−
{{#set: ec number=EC-1.3.1.34}}
+
{{#set: common name=Aspartate/glutamate/uridylate kinase}}
−
{{#set: gene associated=Ec-16_003950}}
+
{{#set: common name=aspartate/glutamate/uridylate kinase}}
−
{{#set: in pathway=PWY-7337}}
+
{{#set: common name=cytidylate kinase}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: ec number=EC-2.7.4.22}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: ec number=EC-2.7.4.14}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: gene associated=Ec-16_005090|Ec-24_000610|Ec-06_003080|Ec-14_004920|Ec-27_003730|Ec-07_003680}}
 +
{{#set: in pathway=PWY-7176}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 21:35, 17 March 2018

Reaction RXN-12002

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Adenylate kinase/UMP-CMP kinase
    • Aspartate/glutamate/uridylate kinase
    • aspartate/glutamate/uridylate kinase
    • cytidylate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 UMP[c] => 1 UDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7176, UTP and CTP de novo biosynthesis: PWY-7176
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links







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