Difference between revisions of "PHOSPHOGLYCERATE-PHOSPHATASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** porphobil...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11026 RXN-11026] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA oxidase, partial *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11026 RXN-11026] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** porphobilinogen synthase, putative chloroplast precursor
+
** acyl-CoA oxidase, partial
 +
** acyl-CoA oxidase
 +
** Acyl-CoA oxidase/dehydrogenase, central domain
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.24 EC-4.2.1.24]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[PORPHOBILINOGEN]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[TRANS-D2-ENOYL-COA]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 5-aminolevulinate[c] '''=>''' 1 H+[c] '''+''' 2 H2O[c] '''+''' 1 porphobilinogen[c]
+
** 1 oxygen[c] '''+''' 1 a 2,3,4-saturated fatty acyl CoA[c] '''=>''' 1 a trans-2-enoyl-CoA[c] '''+''' 1 hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-00_001750]]
+
* [[Ec-08_006390]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-26_004320]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-22_002920]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
+
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
+
* [[PWY-7288]], fatty acid β-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P06214 P06214]
 
−
** [http://www.uniprot.org/uniprot/P13716 P13716]
 
−
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
 
−
** [http://www.uniprot.org/uniprot/P30124 P30124]
 
−
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
 
−
** [http://www.uniprot.org/uniprot/P30950 P30950]
 
−
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
 
−
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
 
−
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
 
−
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
 
−
** [http://www.uniprot.org/uniprot/P10518 P10518]
 
−
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
 
−
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
 
−
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
 
−
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 
−
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 
−
** [http://www.uniprot.org/uniprot/P05373 P05373]
 
−
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 
−
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 
−
** [http://www.uniprot.org/uniprot/P43210 P43210]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=porphobilinogen synthase, putative chloroplast precursor}}
+
{{#set: common name=acyl-CoA oxidase, partial}}
−
{{#set: ec number=EC-4.2.1.24}}
+
{{#set: common name=acyl-CoA oxidase}}
−
{{#set: gene associated=Ec-00_001750}}
+
{{#set: common name=Acyl-CoA oxidase/dehydrogenase, central domain}}
−
{{#set: in pathway=PWY-5189|PWY-5188}}
+
{{#set: ec number=EC-1.3.3.6}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Ec-08_006390|Ec-26_004320|Ec-22_002920}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-5136|PWY-7288|PWY66-391}}
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 21:36, 17 March 2018

Reaction RXN-11026

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-CoA oxidase, partial
    • acyl-CoA oxidase
    • Acyl-CoA oxidase/dehydrogenase, central domain
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7288, fatty acid β-oxidation (peroxisome, yeast): PWY-7288
    • 2 reactions found over 5 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PHOSPHOGLYCERATE-PHOSPHATASE-RXN&oldid=13665"