Difference between revisions of "Ec-16 003030"

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(Created page with "Category:Gene == Gene Ec-10_006360 == * left end position: ** 6385066 * transcription direction: ** NEGATIVE * right end position: ** 6393748 * centisome position: ** 98.2...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14048 RXN-14048] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxal phosphate-depende...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-10_006360 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14048 RXN-14048] ==
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* left end position:
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* direction:
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** 6385066
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Pyridoxal phosphate-dependent transferase, major region, subdomain 1
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* right end position:
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** 6393748
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* centisome position:
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** 98.2169   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0006_0214
 
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** Esi0006_0214
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.2.4.4-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[L-CYSTATHIONINE]][c] '''=>''' 1 [[CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-15056]][c]
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***ec-number
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* With common name(s):
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* [[KETOISOCAPROATE-RXN]]
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** 1 L-cystathionine[c] '''=>''' 1 L-cysteine[c] '''+''' 1 H+[c] '''+''' 1 (2Z)-2-aminobut-2-enoate[c]
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** esiliculosus_genome
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***ec-number
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== Genes associated with this reaction  ==
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* [[METHYLVALERATE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** esiliculosus_genome
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* [[Ec-12_003100]]
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***ec-number
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** ESILICULOSUS_GENOME
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-5046]]
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== Pathways  ==
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* [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSDEGR-PWY HOMOCYSDEGR-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-801]], L-homocysteine and L-cysteine interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-801 PWY-801]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=6385066}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24913 24913]
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{{#set: right end position=6393748}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=98.2169    }}
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{{#set: common name=Pyridoxal phosphate-dependent transferase, major region, subdomain 1}}
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{{#set: common name=Esi_0006_0214|Esi0006_0214}}
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{{#set: gene associated=Ec-12_003100}}
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{{#set: reaction associated=1.2.4.4-RXN|KETOISOCAPROATE-RXN|METHYLVALERATE-RXN}}
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{{#set: in pathway=HOMOCYSDEGR-PWY|PWY-801}}
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{{#set: pathway associated=PWY-5046}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 22:41, 17 March 2018

Reaction RXN-14048

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyridoxal phosphate-dependent transferase, major region, subdomain 1
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-cystathionine[c] => 1 L-cysteine[c] + 1 H+[c] + 1 (2Z)-2-aminobut-2-enoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • HOMOCYSDEGR-PWY, L-cysteine biosynthesis III (from L-homocysteine): HOMOCYSDEGR-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-801, L-homocysteine and L-cysteine interconversion: PWY-801
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-16_003030&oldid=14038"