Difference between revisions of "Ec-09 002720"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Ec-05_000260 == * left end position: ** 711834 * transcription direction: ** NEGATIVE * right end position: ** 719400 * centisome position: ** 7.8193...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** A...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Ec-05_000260 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] ==
−
* left end position:
+
* direction:
−
** 711834
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** Agmatine deiminase
−
* right end position:
+
* ec number:
−
** 719400
+
** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
−
* centisome position:
+
−
** 7.819341   
+
 
* Synonym(s):
 
* Synonym(s):
−
** Esi_0249_0032
 
−
** Esi0249_0032
 
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ACID-PHOSPHATASE-RXN]]
+
* With identifiers:
−
** esiliculosus_genome
+
** 1 [[WATER]][c] '''+''' 1 [[AGMATHINE]][c] '''=>''' 1 [[CPD-597]][c] '''+''' 1 [[AMMONIUM]][c]
−
***go-term
+
* With common name(s):
−
* [[RXN-5822]]
+
** 1 H2O[c] '''+''' 1 agmatine[c] '''=>''' 1 N-carbamoylputrescine[c] '''+''' 1 ammonium[c]
−
** esiliculosus_genome
+
 
−
***go-term
+
== Genes associated with this reaction  ==
−
== Pathways associated ==
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[PWY-6348]]
+
* [[Ec-02_001540]]
−
* [[PWY-5083]]
+
** ESILICULOSUS_GENOME
−
* [[NADPHOS-DEPHOS-PWY]]
+
***EC-NUMBER
−
* [[NAD-BIOSYNTHESIS-II]]
+
== Pathways ==
 +
* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=711834}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
−
{{#set: right end position=719400}}
+
* LIGAND-RXN:
−
{{#set: centisome position=7.819341    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
−
{{#set: common name=Esi_0249_0032|Esi0249_0032}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reaction associated=ACID-PHOSPHATASE-RXN|RXN-5822}}
+
{{#set: common name=Agmatine deiminase}}
−
{{#set: pathway associated=PWY-6348|PWY-5083|NADPHOS-DEPHOS-PWY|NAD-BIOSYNTHESIS-II}}
+
{{#set: ec number=EC-3.5.3.12}}
 +
{{#set: gene associated=Ec-02_001540}}
 +
{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 22:54, 17 March 2018

Reaction AGMATINE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Agmatine deiminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 agmatine[c] => 1 N-carbamoylputrescine[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-43, putrescine biosynthesis II: PWY-43
    • 2 reactions found over 3 reactions in the full pathway
  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): ARGDEG-III-PWY
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-09_002720&oldid=14979"