Difference between revisions of "Light"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
 
(Created page with "Category:Gene == Gene Ec-06_009020 == * left end position: ** 6655604 * transcription direction: ** NEGATIVE * right end position: ** 6664350 * centisome position: ** 75.9...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
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== Gene Ec-06_009020 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 6655604
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* common name:
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* transcription direction:
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** protoporphyrinogen oxidase, putative chloroplast precursor
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
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** 6664350
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* centisome position:
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** 75.996666   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0358_0030
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** Esi0358_0030
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[AMIDASE-RXN]]
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** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
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** esiliculosus_genome
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* With common name(s):
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***automated-name-match
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** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 3 hydrogen peroxide[c] '''+''' 1 protoporphyrin IX[c]
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* [[GUANIDINOBUTANAMIDE-NH3-RXN]]
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** esiliculosus_genome
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== Genes associated with this reaction  ==
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***automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* [[PYRAZIN-RXN]]
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* [[Ec-25_003100]]
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** esiliculosus_genome
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** ESILICULOSUS_GENOME
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***automated-name-match
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***EC-NUMBER
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* [[R311-RXN]]
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** [[pantograph]]-[[aragem]]
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** esiliculosus_genome
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== Pathways  ==
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***automated-name-match
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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* [[RXN-14727]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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** esiliculosus_genome
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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***automated-name-match
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-14728]]
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** esiliculosus_genome
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** '''6''' reactions found over '''9''' reactions in the full pathway
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***automated-name-match
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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* [[RXN-17608]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** esiliculosus_genome
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== Reconstruction information  ==
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***automated-name-match
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* [[orthology]]:
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* [[RXNN-404]]
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** [[pantograph]]:
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** esiliculosus_genome
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*** [[aragem]]
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***automated-name-match
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* [[annotation]]:
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== Pathways associated ==
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** [[pathwaytools]]:
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* [[PWY-581]]
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*** [[esiliculosus_genome]]
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* [[PWY-5025]]
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* [[PWY-3161]]
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* [[ARGDEG-V-PWY]]
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* [[PWY-7308]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=6655604}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=6664350}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
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{{#set: centisome position=75.996666    }}
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* UNIPROT:
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{{#set: common name=Esi_0358_0030|Esi0358_0030}}
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** [http://www.uniprot.org/uniprot/P50336 P50336]
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{{#set: reaction associated=AMIDASE-RXN|GUANIDINOBUTANAMIDE-NH3-RXN|PYRAZIN-RXN|R311-RXN|RXN-14727|RXN-14728|RXN-17608|RXNN-404}}
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** [http://www.uniprot.org/uniprot/Q49404 Q49404]
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{{#set: pathway associated=PWY-581|PWY-5025|PWY-3161|ARGDEG-V-PWY|PWY-7308}}
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** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
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** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
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** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
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** [http://www.uniprot.org/uniprot/P51175 P51175]
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** [http://www.uniprot.org/uniprot/O24163 O24163]
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** [http://www.uniprot.org/uniprot/O24164 O24164]
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** [http://www.uniprot.org/uniprot/O64384 O64384]
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** [http://www.uniprot.org/uniprot/O64385 O64385]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=protoporphyrinogen oxidase, putative chloroplast precursor}}
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{{#set: ec number=EC-1.3.3.4}}
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{{#set: gene associated=Ec-25_003100}}
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{{#set: in pathway=PWY0-1415|PWY-7159|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Revision as of 22:02, 17 March 2018

Gene Ec-06_009020

  • left end position:
    • 6655604
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6664350
  • centisome position:
    • 75.996666
  • Synonym(s):
    • Esi_0358_0030
    • Esi0358_0030

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Light&oldid=15545"