Difference between revisions of "GLYRIBONUCSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13722 RXN-13722] == * direction: ** REVERSIBLE * common name: ** Homoaconitate hydratase * ec n...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidylate kinase * ec n...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13722 RXN-13722] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Homoaconitate hydratase
+
** thymidylate kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.114 EC-4.2.1.114]
+
** [http://enzyme.expasy.org/EC/2.7.4.12 EC-2.7.4.12]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
 +
** [http://enzyme.expasy.org/EC/2.7.4.9 EC-2.7.4.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HOMO-CIT]][c] '''<=>''' 1 [[HOMO-I-CIT]][c]
+
** 1 [[TMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (2R)-homocitrate[c] '''<=>''' 1 (1R,2S)-homoisocitrate[c]
+
** 1 dTMP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 dTDP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-13_001950]]
+
* [[Ec-20_004950]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
−
***EC-NUMBER
+
***GO-TERM
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''14''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32304 32304]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
−
{{#set: direction=REVERSIBLE}}
+
* LIGAND-RXN:
−
{{#set: common name=Homoaconitate hydratase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
−
{{#set: ec number=EC-4.2.1.114}}
+
* UNIPROT:
−
{{#set: gene associated=Ec-13_001950}}
+
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
−
{{#set: in pathway=}}
+
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
 +
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
 +
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
 +
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
 +
** [http://www.uniprot.org/uniprot/P33803 P33803]
 +
** [http://www.uniprot.org/uniprot/P42490 P42490]
 +
** [http://www.uniprot.org/uniprot/P00572 P00572]
 +
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
 +
** [http://www.uniprot.org/uniprot/P68693 P68693]
 +
** [http://www.uniprot.org/uniprot/P23919 P23919]
 +
** [http://www.uniprot.org/uniprot/P36590 P36590]
 +
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
 +
** [http://www.uniprot.org/uniprot/O81650 O81650]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=thymidylate kinase}}
 +
{{#set: ec number=EC-2.7.4.12}}
 +
{{#set: ec number=EC-2.7.4.13}}
 +
{{#set: ec number=EC-2.7.4.9}}
 +
{{#set: gene associated=Ec-20_004950}}
 +
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 20:32, 17 March 2018

Reaction DTMPKI-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dTMP[c] + 1 ATP[c] => 1 ADP[c] + 1 dTDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 14 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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