Difference between revisions of "TRP"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] == |
| − | * | + | * direction: |
| − | ** | + | ** LEFT-TO-RIGHT |
* common name: | * common name: | ||
| − | ** | + | ** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs |
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/2.5.1.21 EC-2.5.1.21] | ||
* Synonym(s): | * Synonym(s): | ||
| − | == Reaction(s) | + | == Reaction Formula == |
| − | + | * With identifiers: | |
| − | * [[ | + | ** 2 [[FARNESYL-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 2 [[PPI]][c] '''+''' 1 [[SQUALENE]][c] |
| − | == | + | * With common name(s): |
| − | * [http://metacyc.org/META/NEW-IMAGE?object= | + | ** 2 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 H+[c] '''+''' 1 NAD(P)H[c] '''=>''' 1 NAD(P)+[c] '''+''' 2 diphosphate[c] '''+''' 1 squalene[c] |
| − | * [ | + | |
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * [[Ec-11_001030]] | ||
| + | ** ESILICULOSUS_GENOME | ||
| + | ***EC-NUMBER | ||
| + | == Pathways == | ||
| + | * [[PWY-5670]], epoxysqualene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5670 PWY-5670] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-esiliculosus_genome]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | * RHEA: |
| − | {{#set: common name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32302 32302] |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32296 32296] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R06223 R06223] |
| + | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}} | ||
| + | {{#set: ec number=EC-2.5.1.21}} | ||
| + | {{#set: gene associated=Ec-11_001030}} | ||
| + | {{#set: in pathway=PWY-5670}} | ||
| + | {{#set: reconstruction category=annotation}} | ||
| + | {{#set: reconstruction source=annotation-esiliculosus_genome}} | ||
| + | {{#set: reconstruction tool=pathwaytools}} | ||
Revision as of 20:51, 17 March 2018
Contents
Reaction RXN-13162
- direction:
- LEFT-TO-RIGHT
- common name:
- Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 FARNESYL-PP[c] + 1 PROTON[c] + 1 NADH-P-OR-NOP[c] => 1 NAD-P-OR-NOP[c] + 2 PPI[c] + 1 SQUALENE[c]
- With common name(s):
- 2 (2E,6E)-farnesyl diphosphate[c] + 1 H+[c] + 1 NAD(P)H[c] => 1 NAD(P)+[c] + 2 diphosphate[c] + 1 squalene[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Ec-11_001030
- ESILICULOSUS_GENOME
- EC-NUMBER
- ESILICULOSUS_GENOME
Pathways
- PWY-5670, epoxysqualene biosynthesis: PWY-5670
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-esiliculosus_genome
- Tool: pathwaytools
- Source: annotation-esiliculosus_genome
External links
