Difference between revisions of "PROTOPORPHYRIN IX"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogenase (NADP+)...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14642 RXN-14642] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14642 RXN-14642] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
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* common name:
+
* ec number:
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** isocitrate dehydrogenase (NADP+)
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** [http://enzyme.expasy.org/EC/1.2.1 EC-1.2.1]
 
* Synonym(s):
 
* Synonym(s):
−
** oxalsuccinic decarboxylase
 
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** isocitrate (NADP) dehydrogenase
 
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** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 
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** NADP-specific isocitrate dehydrogenase
 
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** NADP-linked isocitrate dehydrogenase
 
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** NADP isocitric dehydrogenase
 
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** isocitrate dehydrogenase (NADP-dependent)
 
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** NADP-dependent isocitric dehydrogenase
 
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** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 
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** NADP+-linked isocitrate dehydrogenase
 
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** IDH (ambiguous)
 
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** dual-cofactor-specific isocitrate dehydrogenase
 
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** NADP+-ICDH
 
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** NADP+-IDH
 
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** IDP
 
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** IDP1
 
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** IDP2
 
−
** IDP3
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c]
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** 1 [[Acceptor]][c] '''+''' 1 [[GLYCOLALDEHYDE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GLYCOLLATE]][c] '''+''' 1 [[Donor-H2]][c]
 
* With common name(s):
 
* With common name(s):
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** 1 oxalosuccinate[c] '''+''' 1 H+[c] '''<=>''' 1 CO2[c] '''+''' 1 2-oxoglutarate[c]
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** 1 an oxidized unknown electron acceptor[c] '''+''' 1 glycolaldehyde[c] '''=>''' 1 H+[c] '''+''' 1 glycolate[c] '''+''' 1 an reduced unknown electron acceptor[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-11_003080]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
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* Category: [[gap-filling]]
−
** Source: [[annotation-esiliculosus_genome]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** Tool: [[pathwaytools]]
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*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
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{{#set: ec number=EC-1.2.1}}
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{{#set: direction=REVERSIBLE}}
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{{#set: in pathway=PWY-7295|PWY-7294}}
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{{#set: common name=isocitrate dehydrogenase (NADP+)}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: common name=oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: gene associated=Ec-11_003080}}
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{{#set: reconstruction tool=meneco}}
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{{#set: in pathway=}}
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{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 13:10, 21 March 2018

Reaction RXN-14642

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an oxidized unknown electron acceptor[c] + 1 glycolaldehyde[c] => 1 H+[c] + 1 glycolate[c] + 1 an reduced unknown electron acceptor[c]

Genes associated with this reaction

Pathways

  • PWY-7295, L-arabinose degradation IV: PWY-7295
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7294, xylose degradation IV: PWY-7294
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PROTOPORPHYRIN_IX&oldid=16165"