Difference between revisions of "PWY-7414"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10661 RXN-10661] == * direction: ** LEFT-TO-RIGHT * common name: ** Glucose/ribitol dehydrogena...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] == * direction: ** LEFT-TO-RIGHT * common name: ** Pectin lyase fold * ec numb...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10661 RXN-10661] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glucose/ribitol dehydrogenase
+
** Pectin lyase fold
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.9 EC-1.3.1.9]
+
** [http://enzyme.expasy.org/EC/4.2.2.10 EC-4.2.2.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADH]][c] '''+''' 1 [[Trans-D3-cis-D9-hexadecenoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Palmitoleoyl-ACPs]][c] '''+''' 1 [[NAD]][c]
+
** 1 [[Pectin]][c] '''=>''' 1 [[CPD-11241]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADH[c] '''+''' 1 a trans-Δ3-cis-Δ9-hexadecenoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a palmitoleoyl-[acp][c] '''+''' 1 NAD+[c]
+
** 1 a pectin[c] '''=>''' 1 4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-27_002470]]
+
* Gene: [[Ec-08_000940]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-04_001770]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-08_000930]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-18_004360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-13_002310]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-21_001490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-14_000190]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-12_000410]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-00_009490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-21_003140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-02_001170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-08_000860]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-00_010800]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-13_002650]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-20_003100]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-02_001160]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-14_000350]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-00_006370]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-23_004040]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-25_001080]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-08_000920]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-13_002330]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-09_004260]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-09_004230]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-00_011490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-14_004740]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-20_003120]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-21_001360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-13_002640]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6282 PWY-6282]
+
* [[PWY-7243]], pectin degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7243 PWY-7243]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 29: Line 113:
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glucose/ribitol dehydrogenase}}
+
{{#set: common name=Pectin lyase fold}}
−
{{#set: ec number=EC-1.3.1.9}}
+
{{#set: ec number=EC-4.2.2.10}}
−
{{#set: gene associated=Ec-27_002470}}
+
{{#set: gene associated=Ec-08_000940|Ec-04_001770|Ec-08_000930|Ec-18_004360|Ec-13_002310|Ec-21_001490|Ec-14_000190|Ec-12_000410|Ec-00_009490|Ec-21_003140|Ec-02_001170|Ec-08_000860|Ec-00_010800|Ec-13_002650|Ec-20_003100|Ec-02_001160|Ec-14_000350|Ec-00_006370|Ec-23_004040|Ec-25_001080|Ec-08_000920|Ec-13_002330|Ec-09_004260|Ec-09_004230|Ec-00_011490|Ec-14_004740|Ec-20_003120|Ec-21_001360|Ec-13_002640}}
−
{{#set: in pathway=PWY-6282}}
+
{{#set: in pathway=PWY-7243}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:11, 21 March 2018

Reaction RXN-14897

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pectin lyase fold
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a pectin[c] => 1 4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7243, pectin degradation I: PWY-7243
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-7414&oldid=16423"