Difference between revisions of "Ec-23 003970"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOMEVALONATE-KINASE-RXN PHOSPHOMEVALONATE-KINASE-RXN] == * direction: ** REVERSIBLE * common n...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOMEVALONATE-KINASE-RXN PHOSPHOMEVALONATE-KINASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082] ==
* direction:
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* taxonomic range:
** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
** GHMP kinase, C-terminal domain
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** alginate biosynthesis II (bacterial)
* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.2 EC-2.7.4.2]
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* Synonym(s):
 
* Synonym(s):
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** bacterial alginate biosynthesis
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''2''' reactions found over '''7''' reactions in the full pathway
** 1 [[CPD-499]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-641]][c]
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* [[GDP-MANNOSE-6-DEHYDROGENASE-RXN]]
* With common name(s):
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** 2 associated gene(s):
** 1 (R)-mevalonate 5-phosphate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 (R)-mevalonate diphosphate[c]
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*** [[Ec-19_004880]]
 
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*** [[Ec-16_004740]]
== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
* [[Ec-25_002910]]
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* [[RXN-9839]]
** ESILICULOSUS_GENOME
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** 11 associated gene(s):
***EC-NUMBER
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*** [[Ec-27_006700]]
** [[pantograph]]-[[aragem]]
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*** [[Ec-24_002750]]
== Pathways  ==
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*** [[Ec-20_004700]]
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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*** [[Ec-11_000400]]
** '''7''' reactions found over '''7''' reactions in the full pathway
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*** [[Ec-08_004820]]
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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*** [[Ec-12_000360]]
** '''7''' reactions found over '''8''' reactions in the full pathway
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*** [[Ec-25_001850]]
== Reconstruction information  ==
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*** [[Ec-06_006700]]
* [[orthology]]:
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*** [[Ec-07_000890]]
** [[pantograph]]:
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*** [[Ec-19_003150]]
*** [[aragem]]
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*** [[Ec-09_003950]]
* [[annotation]]:
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** 1 reconstruction source(s) associated:
** [[pathwaytools]]:
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*** [[annotation-esiliculosus_genome]]
*** [[esiliculosus_genome]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=ALGINATE-SYNTHASE-RXN ALGINATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16462 RXN-16462]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-269 TRANS-RXN-269]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-270 TRANS-RXN-270]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-271 TRANS-RXN-271]
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: taxonomic range=TAX-2}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16341 16341]
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{{#set: common name=alginate biosynthesis II (bacterial)}}
* LIGAND-RXN:
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{{#set: common name=bacterial alginate biosynthesis}}
** [http://www.genome.jp/dbget-bin/www_bget?R03245 R03245]
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{{#set: reaction found=2}}
* UNIPROT:
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{{#set: total reaction=7}}
** [http://www.uniprot.org/uniprot/P24521 P24521]
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{{#set: completion rate=29.0}}
{{#set: direction=REVERSIBLE}}
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{{#set: common name=GHMP kinase, C-terminal domain}}
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{{#set: ec number=EC-2.7.4.2}}
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{{#set: gene associated=Ec-25_002910}}
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{{#set: in pathway=PWY-922|PWY-7391}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Revision as of 21:35, 17 March 2018

Pathway PWY-6082

  • taxonomic range:
  • common name:
    • alginate biosynthesis II (bacterial)
  • Synonym(s):
    • bacterial alginate biosynthesis

Reaction(s) found

2 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links