Difference between revisions of "2.7.11.2-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5391 PWY-5391] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-5...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.223-RXN 2.4.1.223-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** acetylglucosaminylt...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5391 PWY-5391] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.223-RXN 2.4.1.223-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** syringetin biosynthesis
+
** acetylglucosaminyltransferase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.4.1.223 EC-2.4.1.223]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''1''' reactions found over '''5''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-8450]]
+
** 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''+''' 1 [[GlcA-Gal-Gal-Xyl-Proteins]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP]][c]
−
** 3 associated gene(s):
+
* With common name(s):
−
*** [[Ec-19_002750]]
+
** 1 UDP-N-acetyl-α-D-glucosamine[c] '''+''' 1 β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein][c] '''=>''' 1 H+[c] '''+''' 1 α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein][c] '''+''' 1 UDP[c]
−
*** [[Ec-19_002760]]
+
 
−
*** [[Ec-08_003510]]
+
== Genes associated with this reaction  ==
−
** 1 reconstruction source(s) associated:
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[orthology-aragem]]
+
* Gene: [[Ec-14_005460]]
−
== Reaction(s) not found ==
+
** Source: [[annotation-esiliculosus_genome]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13718 RXN-13718]
+
*** Assignment: GO-TERM
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-525 RXN-525]
+
* Gene: [[Ec-15_002870]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8451 RXN-8451]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8452 RXN-8452]
+
*** Assignment: GO-TERM
 +
* Gene: [[Ec-08_002720]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_003840]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-02_004080]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-23_000390]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-23_003230]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
== Pathways  ==
 +
* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-58024}}
+
* LIGAND-RXN:
−
{{#set: common name=syringetin biosynthesis}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07397 R07397]
−
{{#set: reaction found=1}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: total reaction=5}}
+
{{#set: common name=acetylglucosaminyltransferase}}
−
{{#set: completion rate=20.0}}
+
{{#set: ec number=EC-2.4.1.223}}
 +
{{#set: gene associated=Ec-14_005460|Ec-15_002870|Ec-08_002720|Ec-14_003840|Ec-02_004080|Ec-23_000390|Ec-23_003230}}
 +
{{#set: in pathway=PWY-6558}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:15, 21 March 2018

Reaction 2.4.1.223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acetylglucosaminyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UDP-N-acetyl-α-D-glucosamine[c] + 1 β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein][c] => 1 H+[c] + 1 α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein][c] + 1 UDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6558, heparan sulfate biosynthesis (late stages): PWY-6558
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=2.7.11.2-RXN&oldid=17037"