Difference between revisions of "SUC"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydratase **...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** REVERSIBLE
 
* common name:
 
* common name:
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** pyrimidine deoxyribonucleotides de novo biosynthesis IV
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** 3-isopropylmalate dehydratase
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** Aconitase/3-isopropylmalate dehydratase, swivel
 
* Synonym(s):
 
* Synonym(s):
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** (2R,3S)-3-isopropylmalate hydro-lyase
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** β-isopropylmalate dehydratase
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** α-isopropylmalate isomerase
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** 3-isopropylmalate hydro-lyase
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[CDPREDUCT-RXN]]
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** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-9451]][c]
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** 7 associated gene(s):
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* With common name(s):
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*** [[Ec-06_005120]]
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** 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 H2O[c] '''+''' 1 2-isopropylmaleate[c]
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*** [[Ec-11_002170]]
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*** [[Ec-19_000440]]
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== Genes associated with this reaction  ==
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*** [[Ec-11_002180]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-21_002920]]
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* Gene: [[Ec-13_001950]]
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*** [[Ec-17_003700]]
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** Source: [[orthology-aragem]]
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*** [[Ec-06_005570]]
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* Gene: [[Ec-12_000170]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** [[orthology-aragem]]
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** Source: [[orthology-aragem]]
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* [[DCDPKIN-RXN]]
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* Gene: [[Ec-sdr_f_000030]]
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** 7 associated gene(s):
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** Source: [[orthology-aragem]]
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*** [[Ec-04_001140]]
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== Pathways  ==
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*** [[Ec-11_005170]]
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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*** [[Ec-03_001380]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[Ec-26_003930]]
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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*** [[Ec-07_000140]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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*** [[Ec-22_003280]]
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== Reconstruction information  ==
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*** [[Ec-11_004330]]
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* Category: [[orthology]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
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*** [[annotation-esiliculosus_genome]]
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*** Tool: [[pantograph]]
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*** [[orthology-aragem]]
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* Category: [[annotation]]
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* [[DTDPKIN-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 7 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Ec-26_003930]]
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*** [[Ec-04_001140]]
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*** [[Ec-11_004330]]
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*** [[Ec-22_003280]]
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*** [[Ec-11_005170]]
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*** [[Ec-03_001380]]
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*** [[Ec-07_000140]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[DTMPKI-RXN]]
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** 1 associated gene(s):
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*** [[Ec-20_004950]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-12195]]
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** 9 associated gene(s):
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*** [[Ec-02_005730]]
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*** [[Ec-03_001180]]
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*** [[Ec-05_005340]]
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*** [[Ec-18_004660]]
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*** [[Ec-06_005470]]
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*** [[Ec-01_003690]]
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*** [[Ec-17_000870]]
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*** [[Ec-28_000420]]
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*** [[Ec-03_004860]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[THYMIDYLATESYN-RXN]]
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** 1 associated gene(s):
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*** [[Ec-27_004630]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=3.5.4.30-RXN 3.5.4.30-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2157}}
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* RHEA:
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{{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis IV}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
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{{#set: reaction found=6}}
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* LIGAND-RXN:
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{{#set: total reaction=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
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{{#set: completion rate=86.0}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-isopropylmalate dehydratase}}
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{{#set: common name=Aconitase/3-isopropylmalate dehydratase, swivel}}
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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{{#set: gene associated=Ec-13_001950|Ec-12_000170|Ec-sdr_f_000030}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:16, 21 March 2018

Reaction RXN-8991

  • direction:
    • REVERSIBLE
  • common name:
    • 3-isopropylmalate dehydratase
    • Aconitase/3-isopropylmalate dehydratase, swivel
  • Synonym(s):
    • (2R,3S)-3-isopropylmalate hydro-lyase
    • β-isopropylmalate dehydratase
    • α-isopropylmalate isomerase
    • 3-isopropylmalate hydro-lyase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • LEUSYN-PWY, L-leucine biosynthesis: LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered): PWY-6871
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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