Difference between revisions of "PWY0-1296"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7270 PWY-7270] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2043 RXN-2043] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycoside hydrolase, catalyti...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7270 PWY-7270] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2043 RXN-2043] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-methionine salvage cycle II (plants)
+
** Glycoside hydrolase, catalytic domain
 +
** Glycoside hydrolase/deacetylase, beta/alpha-barrel
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.2.1.4 EC-3.2.1.4]
 
* Synonym(s):
 
* Synonym(s):
−
** 5'-methylthioadenosine cycle
 
−
** superpathway of L-methionine recycling (plants)
 
−
** MTA cycle
 
−
** Yang cycle
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''3''' reactions found over '''7''' reactions in the full pathway
+
* With identifiers:
−
* [[4.4.1.14-RXN]]
+
** 1 [[CELLULOSE]][c] '''+''' n [[WATER]][c] '''=>''' n [[Cellodextrins]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Ec-04_003460]]
+
** 1 cellulose[c] '''+''' n H2O[c] '''=>''' n a cellodextrin[c]
−
** 2 reconstruction source(s) associated:
+
 
−
*** [[annotation-esiliculosus_genome]]
+
== Genes associated with this reaction  ==
−
*** [[orthology-aragem]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[PWY-4361]]
+
* Gene: [[Ec-23_003530]]
−
** 0 associated gene:
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[SAM-PWY]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** 0 associated gene:
+
* Gene: [[Ec-08_004650]]
−
== Reaction(s) not found ==
+
** Source: [[annotation-esiliculosus_genome]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=PWY-6754 PWY-6754]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=PWY-6754 PWY-6754]
+
* Gene: [[Ec-19_000430]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-6788]], cellulose degradation II (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6788 PWY-6788]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-33090}}
+
* UNIPROT:
−
{{#set: common name=L-methionine salvage cycle II (plants)}}
+
** [http://www.uniprot.org/uniprot/O64949 O64949]
−
{{#set: common name=5'-methylthioadenosine cycle|superpathway of L-methionine recycling (plants)|MTA cycle|Yang cycle}}
+
** [http://www.uniprot.org/uniprot/O64402 O64402]
−
{{#set: reaction found=3}}
+
** [http://www.uniprot.org/uniprot/O59943 O59943]
−
{{#set: total reaction=7}}
+
** [http://www.uniprot.org/uniprot/P22503 P22503]
−
{{#set: completion rate=43.0}}
+
** [http://www.uniprot.org/uniprot/O50014 O50014]
 +
** [http://www.uniprot.org/uniprot/O50013 O50013]
 +
** [http://www.uniprot.org/uniprot/O50012 O50012]
 +
** [http://www.uniprot.org/uniprot/O50011 O50011]
 +
** [http://www.uniprot.org/uniprot/O64401 O64401]
 +
** [http://www.uniprot.org/uniprot/O23954 O23954]
 +
** [http://www.uniprot.org/uniprot/O22298 O22298]
 +
** [http://www.uniprot.org/uniprot/O22297 O22297]
 +
** [http://www.uniprot.org/uniprot/O04890 O04890]
 +
** [http://www.uniprot.org/uniprot/Q39848 Q39848]
 +
** [http://www.uniprot.org/uniprot/Q39847 Q39847]
 +
** [http://www.uniprot.org/uniprot/O04972 O04972]
 +
** [http://www.uniprot.org/uniprot/Q41012 Q41012]
 +
** [http://www.uniprot.org/uniprot/Q39826 Q39826]
 +
** [http://www.uniprot.org/uniprot/Q42872 Q42872]
 +
** [http://www.uniprot.org/uniprot/Q42871 Q42871]
 +
** [http://www.uniprot.org/uniprot/Q9SVJ2 Q9SVJ2]
 +
** [http://www.uniprot.org/uniprot/Q9SVJ3 Q9SVJ3]
 +
** [http://www.uniprot.org/uniprot/Q9SVJ4 Q9SVJ4]
 +
** [http://www.uniprot.org/uniprot/Q9SUS0 Q9SUS0]
 +
** [http://www.uniprot.org/uniprot/Q9SZ90 Q9SZ90]
 +
** [http://www.uniprot.org/uniprot/O64890 O64890]
 +
** [http://www.uniprot.org/uniprot/O64889 O64889]
 +
** [http://www.uniprot.org/uniprot/O82513 O82513]
 +
** [http://www.uniprot.org/uniprot/O80497 O80497]
 +
** [http://www.uniprot.org/uniprot/O64891 O64891]
 +
** [http://www.uniprot.org/uniprot/O81416 O81416]
 +
** [http://www.uniprot.org/uniprot/O48766 O48766]
 +
** [http://www.uniprot.org/uniprot/Q55365 Q55365]
 +
** [http://www.uniprot.org/uniprot/Q38890 Q38890]
 +
** [http://www.uniprot.org/uniprot/Q12665 Q12665]
 +
** [http://www.uniprot.org/uniprot/Q43751 Q43751]
 +
** [http://www.uniprot.org/uniprot/Q9SML6 Q9SML6]
 +
** [http://www.uniprot.org/uniprot/Q43750 Q43750]
 +
** [http://www.uniprot.org/uniprot/Q38817 Q38817]
 +
** [http://www.uniprot.org/uniprot/P43317 P43317]
 +
** [http://www.uniprot.org/uniprot/Q42875 Q42875]
 +
** [http://www.uniprot.org/uniprot/Q42660 Q42660]
 +
** [http://www.uniprot.org/uniprot/Q59665 Q59665]
 +
** [http://www.uniprot.org/uniprot/Q59395 Q59395]
 +
** [http://www.uniprot.org/uniprot/Q43149 Q43149]
 +
** [http://www.uniprot.org/uniprot/Q12624 Q12624]
 +
** [http://www.uniprot.org/uniprot/P38534 P38534]
 +
** [http://www.uniprot.org/uniprot/P23666 P23666]
 +
** [http://www.uniprot.org/uniprot/P19424 P19424]
 +
** [http://www.uniprot.org/uniprot/P07982 P07982]
 +
** [http://www.uniprot.org/uniprot/Q05156 Q05156]
 +
** [http://www.uniprot.org/uniprot/Q7M0M9 Q7M0M9]
 +
** [http://www.uniprot.org/uniprot/Q9R5L7 Q9R5L7]
 +
** [http://www.uniprot.org/uniprot/Q53302 Q53302]
 +
** [http://www.uniprot.org/uniprot/P26224 P26224]
 +
** [http://www.uniprot.org/uniprot/P21834 P21834]
 +
** [http://www.uniprot.org/uniprot/P21833 P21833]
 +
** [http://www.uniprot.org/uniprot/P22669 P22669]
 +
** [http://www.uniprot.org/uniprot/P05522 P05522]
 +
** [http://www.uniprot.org/uniprot/P07103 P07103]
 +
** [http://www.uniprot.org/uniprot/P10474 P10474]
 +
** [http://www.uniprot.org/uniprot/Q46002 Q46002]
 +
** [http://www.uniprot.org/uniprot/P16630 P16630]
 +
** [http://www.uniprot.org/uniprot/Q59241 Q59241]
 +
** [http://www.uniprot.org/uniprot/P13933 P13933]
 +
** [http://www.uniprot.org/uniprot/P07985 P07985]
 +
** [http://www.uniprot.org/uniprot/P19570 P19570]
 +
** [http://www.uniprot.org/uniprot/P20847 P20847]
 +
** [http://www.uniprot.org/uniprot/P23549 P23549]
 +
** [http://www.uniprot.org/uniprot/P23550 P23550]
 +
** [http://www.uniprot.org/uniprot/P19487 P19487]
 +
** [http://www.uniprot.org/uniprot/P16218 P16218]
 +
** [http://www.uniprot.org/uniprot/P23340 P23340]
 +
** [http://www.uniprot.org/uniprot/Q01409 Q01409]
 +
** [http://www.uniprot.org/uniprot/O67401 O67401]
 +
** [http://www.uniprot.org/uniprot/Q7M4T4 Q7M4T4]
 +
** [http://www.uniprot.org/uniprot/P28622 P28622]
 +
** [http://www.uniprot.org/uniprot/P94622 P94622]
 +
** [http://www.uniprot.org/uniprot/Q45554 Q45554]
 +
** [http://www.uniprot.org/uniprot/Q59963 Q59963]
 +
** [http://www.uniprot.org/uniprot/P54937 P54937]
 +
** [http://www.uniprot.org/uniprot/Q03882 Q03882]
 +
** [http://www.uniprot.org/uniprot/P10475 P10475]
 +
** [http://www.uniprot.org/uniprot/P10477 P10477]
 +
** [http://www.uniprot.org/uniprot/P04954 P04954]
 +
** [http://www.uniprot.org/uniprot/P04956 P04956]
 +
** [http://www.uniprot.org/uniprot/P04955 P04955]
 +
** [http://www.uniprot.org/uniprot/Q01786 Q01786]
 +
** [http://www.uniprot.org/uniprot/P26221 P26221]
 +
** [http://www.uniprot.org/uniprot/P29719 P29719]
 +
** [http://www.uniprot.org/uniprot/P06565 P06565]
 +
** [http://www.uniprot.org/uniprot/Q59290 Q59290]
 +
** [http://www.uniprot.org/uniprot/Q12714 Q12714]
 +
** [http://www.uniprot.org/uniprot/P17877 P17877]
 +
** [http://www.uniprot.org/uniprot/P29019 P29019]
 +
** [http://www.uniprot.org/uniprot/P16216 P16216]
 +
** [http://www.uniprot.org/uniprot/P17974 P17974]
 +
** [http://www.uniprot.org/uniprot/P26222 P26222]
 +
** [http://www.uniprot.org/uniprot/Q53324 Q53324]
 +
** [http://www.uniprot.org/uniprot/Q05332 Q05332]
 +
** [http://www.uniprot.org/uniprot/P23548 P23548]
 +
** [http://www.uniprot.org/uniprot/P06564 P06564]
 +
** [http://www.uniprot.org/uniprot/Q45532 Q45532]
 +
** [http://www.uniprot.org/uniprot/P07983 P07983]
 +
** [http://www.uniprot.org/uniprot/P07981 P07981]
 +
** [http://www.uniprot.org/uniprot/P06566 P06566]
 +
** [http://www.uniprot.org/uniprot/P07984 P07984]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Glycoside hydrolase, catalytic domain}}
 +
{{#set: common name=Glycoside hydrolase/deacetylase, beta/alpha-barrel}}
 +
{{#set: ec number=EC-3.2.1.4}}
 +
{{#set: gene associated=Ec-23_003530|Ec-08_004650|Ec-19_000430}}
 +
{{#set: in pathway=PWY-6788}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:17, 21 March 2018

Reaction RXN-2043

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycoside hydrolase, catalytic domain
    • Glycoside hydrolase/deacetylase, beta/alpha-barrel
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 cellulose[c] + n H2O[c] => n a cellodextrin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6788, cellulose degradation II (fungi): PWY-6788
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY0-1296&oldid=17351"