Difference between revisions of "Eicosadienoates"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec nu...")
 
(Created page with "Category:Gene == Gene Ec-12_005060 == * left end position: ** 4635702 * transcription direction: ** POSITIVE * right end position: ** 4639899 * centisome position: ** 55.6...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] ==
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== Gene Ec-12_005060 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 4635702
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.14.11.9 EC-1.14.11.9]
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** POSITIVE
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* right end position:
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** 4639899
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* centisome position:
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** 55.610283   
 
* Synonym(s):
 
* Synonym(s):
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** Flavonone 3-hydroxylase
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** Esi_0287_0019
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** Naringenin,2-oxoglutarate 3-dioxygenase
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** Esi0287_0019
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[5-NUCLEOTID-RXN]]
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** 1 [[NARINGENIN-CMPD]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
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** esiliculosus_genome
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* With common name(s):
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***go-term
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** 1 (2S)-naringenin[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 (+)-dihydrokaempferol[c] '''+''' 1 CO2[c] '''+''' 1 succinate[c]
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* [[AMP-DEPHOSPHORYLATION-RXN]]
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** esiliculosus_genome
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== Genes associated with this reaction  ==
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***go-term
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-14025]]
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* [[Ec-08_003510]]
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** esiliculosus_genome
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** [[pantograph]]-[[aragem]]
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***go-term
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* [[Ec-19_002750]]
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* [[RXN-14026]]
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** [[pantograph]]-[[aragem]]
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** esiliculosus_genome
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* [[Ec-19_002760]]
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***go-term
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** [[pantograph]]-[[aragem]]
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* [[RXN-14227]]
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== Pathways ==
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** esiliculosus_genome
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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***go-term
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[RXN-5841]]
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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** esiliculosus_genome
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** '''6''' reactions found over '''10''' reactions in the full pathway
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***go-term
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== Reconstruction information  ==
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* [[RXN-7607]]
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* [[orthology]]:
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** esiliculosus_genome
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** [[pantograph]]:
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***go-term
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*** [[aragem]]
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* [[RXN-7609]]
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** esiliculosus_genome
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***go-term
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* [[XMPXAN-RXN]]
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** esiliculosus_genome
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***go-term
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== Pathways associated ==
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* [[PWY-5381]]
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* [[PWY-6607]]
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* [[PWY-7185]]
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* [[SALVADEHYPOX-PWY]]
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* [[PWY-6596]]
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* [[NAD-BIOSYNTHESIS-II]]
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* [[PWY-6606]]
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* [[PWY-6608]]
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* [[PWY-5695]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=4635702}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02444 R02444]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: right end position=4639899}}
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** [http://www.uniprot.org/uniprot/P28038 P28038]
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{{#set: centisome position=55.610283    }}
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** [http://www.uniprot.org/uniprot/Q07353 Q07353]
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{{#set: common name=Esi_0287_0019|Esi0287_0019}}
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** [http://www.uniprot.org/uniprot/Q06942 Q06942]
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{{#set: reaction associated=5-NUCLEOTID-RXN|AMP-DEPHOSPHORYLATION-RXN|RXN-14025|RXN-14026|RXN-14227|RXN-5841|RXN-7607|RXN-7609|XMPXAN-RXN}}
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** [http://www.uniprot.org/uniprot/Q05964 Q05964]
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{{#set: pathway associated=PWY-5381|PWY-6607|PWY-7185|SALVADEHYPOX-PWY|PWY-6596|NAD-BIOSYNTHESIS-II|PWY-6606|PWY-6608|PWY-5695}}
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** [http://www.uniprot.org/uniprot/Q05963 Q05963]
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** [http://www.uniprot.org/uniprot/Q05965 Q05965]
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** [http://www.uniprot.org/uniprot/Q43741 Q43741]
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** [http://www.uniprot.org/uniprot/Q42927 Q42927]
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** [http://www.uniprot.org/uniprot/Q40344 Q40344]
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** [http://www.uniprot.org/uniprot/O49047 O49047]
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** [http://www.uniprot.org/uniprot/Q43262 Q43262]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.14.11.9}}
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{{#set: common name=Flavonone 3-hydroxylase|Naringenin,2-oxoglutarate 3-dioxygenase}}
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{{#set: gene associated=Ec-08_003510|Ec-19_002750|Ec-19_002760}}
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{{#set: in pathway=PWY1F-FLAVSYN|PWY-6787}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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Revision as of 20:54, 17 March 2018

Gene Ec-12_005060

  • left end position:
    • 4635702
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4639899
  • centisome position:
    • 55.610283
  • Synonym(s):
    • Esi_0287_0019
    • Esi0287_0019

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Eicosadienoates&oldid=10831"