Difference between revisions of "XYLULOKIN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12904 CPD-12904] == * smiles: ** CC(C)=CC=CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] == * direction: ** LEFT-TO-RIGHT * common name: ** Red chlorophyll catabolite re...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12904 CPD-12904] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] ==
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* smiles:
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* direction:
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** CC(C)=CC=CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=IFMYVRQEHQTINS-MEOYLLPMSA-J
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* common name:
 
* common name:
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** (2E)-5-methylhexa-2,4-dienoyl-CoA
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** Red chlorophyll catabolite reductase
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* molecular weight:
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* ec number:
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** 871.642   
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** [http://enzyme.expasy.org/EC/1.3.7.12 EC-1.3.7.12]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-11919]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[CPD-7063]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[CPD-7064]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 2 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 red chlorophyll catabolite[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 primary fluorescent chlorophyll catabolite[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-18_003740]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-5098]], chlorophyll a degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5098 PWY-5098]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=50986176 50986176]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24755 24755]
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* LIGAND-CPD:
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?C16468 C16468]
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** [http://www.genome.jp/dbget-bin/www_bget?R09032 R09032]
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{{#set: smiles=CC(C)=CC=CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: inchi key=InChIKey=IFMYVRQEHQTINS-MEOYLLPMSA-J}}
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{{#set: common name=Red chlorophyll catabolite reductase}}
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{{#set: common name=(2E)-5-methylhexa-2,4-dienoyl-CoA}}
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{{#set: ec number=EC-1.3.7.12}}
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{{#set: molecular weight=871.642    }}
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{{#set: gene associated=Ec-18_003740}}
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{{#set: consumed by=RXN-11919}}
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{{#set: in pathway=PWY-5098|PWY-6927}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 20:58, 17 March 2018

Reaction RXN-7741

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Red chlorophyll catabolite reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 H+[c] + 2 a reduced ferredoxin [iron-sulfur] cluster[c] + 1 red chlorophyll catabolite[c] => 2 an oxidized ferredoxin [iron-sulfur] cluster[c] + 1 primary fluorescent chlorophyll catabolite[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5098, chlorophyll a degradation I: PWY-5098
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6927, chlorophyll a degradation II: PWY-6927
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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