Difference between revisions of "Ec-16 001970"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLATE-REDUCTASE-RXN GLYCOLATE-REDUCTASE-RXN] == * direction: ** REVERSIBLE * ec number: ** [htt...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLATE-REDUCTASE-RXN GLYCOLATE-REDUCTASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.173 EC-2.7.1.173]
+
** [http://enzyme.expasy.org/EC/1.1.1.26 EC-1.1.1.26]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-8259]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[GLYCOLLATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 &beta;-D-ribosylnicotinate[c] '''+''' 1 ATP[c] '''=>''' 1 &beta;-nicotinate D-ribonucleotide[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
+
** 1 glycolate[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 glyoxylate[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-16_004800]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-15_004840]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-15_003900]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_000730]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_004610]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_001950]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-21_005740]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-11_006290]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_004490]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_001900]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_004550]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_000710]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-15_000530]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-20_001460]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_007660]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_000780]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_001910]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_000770]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_001640]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-05_003570]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-16_003140]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-25_002150]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-22_003010]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_000480]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-20_002410]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_000140]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_005360]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_003700]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-00_007610]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_001940]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-18_001580]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-26_001500]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-25_003640]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-18_001440]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-11_004850]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-08_005990]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_004630]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-17_001910]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_011080]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-21_003710]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_003160]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_004810]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-12_003110]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-10_000570]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_000720]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_005150]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-17_002300]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_002270]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_001850]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_002670]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_000610]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_003690]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_003890]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_004500]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_002300]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-23_000620]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-20_001110]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_001850]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_000380]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_002040]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-20_003730]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-11_000030]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-14_002550]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_005360]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-18_001480]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-23_001960]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_004480]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_000720]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_005280]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-24_000510]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-15_004730]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-27_003090]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-18_002880]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-23_000190]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-22_003740]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-08_006680]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_001520]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_001650]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_002070]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_004620]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_002500]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_000270]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-23_004280]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-10_000810]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-11_005360]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-18_001450]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-18_002840]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_003750]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-23_000730]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-21_001650]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-09_000670]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-12_003120]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_003040]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-18_001470]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_001800]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-25_000790]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_010590]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_000120]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_001940]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-18_001430]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_000540]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_004940]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-15_004720]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-25_000050]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_000110]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-00_006990]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_001800]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_000460]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-05_004440]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_001790]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_001820]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-15_004850]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_001760]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_003770]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-04_001890]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_003150]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_004470]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-10_004500]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-23_000950]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_002010]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-20_004730]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_000130]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_000290]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_000700]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-09_000980]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_001850]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-00_002000]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-21_005750]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-07_001300]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-03_000050]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-13_000550]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-sdr_f_000110]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-10_004370]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-02_001860]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_001840]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-25_000800]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_011660]]
 
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
+
* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
−
** '''5''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[aragem]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25568 25568]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18229 18229]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03347 R03347]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00717 R00717]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: ec number=EC-2.7.1.173}}
+
{{#set: ec number=EC-1.1.1.26}}
−
{{#set: gene associated=Ec-16_004800|Ec-15_004840|Ec-15_003900|Ec-03_000730|Ec-13_004610|Ec-04_001950|Ec-21_005740|Ec-11_006290|Ec-13_004490|Ec-04_001900|Ec-04_004550|Ec-03_000710|Ec-15_000530|Ec-20_001460|Ec-06_007660|Ec-03_000780|Ec-02_001910|Ec-03_000770|Ec-06_001640|Ec-05_003570|Ec-16_003140|Ec-25_002150|Ec-22_003010|Ec-19_000480|Ec-20_002410|Ec-03_000140|Ec-02_005360|Ec-02_003700|Ec-00_007610|Ec-06_001940|Ec-18_001580|Ec-26_001500|Ec-25_003640|Ec-18_001440|Ec-11_004850|Ec-08_005990|Ec-13_004630|Ec-17_001910|Ec-01_011080|Ec-21_003710|Ec-02_003160|Ec-13_004810|Ec-12_003110|Ec-10_000570|Ec-03_000720|Ec-02_005150|Ec-17_002300|Ec-06_002270|Ec-01_001850|Ec-06_002670|Ec-13_000610|Ec-02_003690|Ec-04_003890|Ec-13_004500|Ec-04_002300|Ec-23_000620|Ec-20_001110|Ec-06_001850|Ec-19_000380|Ec-13_002040|Ec-20_003730|Ec-11_000030|Ec-14_002550|Ec-03_005360|Ec-18_001480|Ec-23_001960|Ec-13_004480|Ec-06_000720|Ec-01_005280|Ec-24_000510|Ec-15_004730|Ec-27_003090|Ec-18_002880|Ec-23_000190|Ec-22_003740|Ec-08_006680|Ec-19_001520|Ec-06_001650|Ec-04_002070|Ec-13_004620|Ec-01_002500|Ec-19_000270|Ec-23_004280|Ec-10_000810|Ec-11_005360|Ec-18_001450|Ec-18_002840|Ec-02_003750|Ec-23_000730|Ec-21_001650|Ec-09_000670|Ec-12_003120|Ec-01_003040|Ec-18_001470|Ec-03_001800|Ec-25_000790|Ec-06_010590|Ec-19_000120|Ec-04_001940|Ec-18_001430|Ec-13_000540|Ec-03_004940|Ec-15_004720|Ec-25_000050|Ec-19_000110|Ec-00_006990|Ec-01_001800|Ec-04_000460|Ec-05_004440|Ec-03_001790|Ec-02_001820|Ec-15_004850|Ec-01_001760|Ec-19_003770|Ec-04_001890|Ec-02_003150|Ec-13_004470|Ec-10_004500|Ec-23_000950|Ec-13_002010|Ec-20_004730|Ec-19_000130|Ec-19_000290|Ec-03_000700|Ec-09_000980|Ec-02_001850|Ec-00_002000|Ec-21_005750|Ec-07_001300|Ec-03_000050|Ec-13_000550|Ec-sdr_f_000110|Ec-10_004370|Ec-02_001860|Ec-06_001840|Ec-25_000800|Ec-01_011660}}
+
{{#set: in pathway=PWY-7295|PWY-7294}}
−
{{#set: in pathway=PWY-5381}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=aragem}}
+
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 22:04, 17 March 2018

Reaction GLYCOLATE-REDUCTASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 glycolate[c] + 1 NAD+[c] <=> 1 H+[c] + 1 glyoxylate[c] + 1 NADH[c]

Genes associated with this reaction

Pathways

  • PWY-7295, L-arabinose degradation IV: PWY-7295
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7294, xylose degradation IV: PWY-7294
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-16_001970&oldid=11489"