Difference between revisions of "Ec-08 003540"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Aldolase-type TIM barrel...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** adenosylcobalamin salvage from cobinamide I
+
** Aldolase-type TIM barrel
 +
** Indole-3-glycerol phosphate synthase
 +
** FIST domain, N-terminal
 +
** indole-3-glycerol-phosphate synthase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
 
* Synonym(s):
 
* Synonym(s):
−
** vitamin B12 biosynthesis
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''1''' reactions found over '''6''' reactions in the full pathway
+
* With identifiers:
−
* [[BTUR2-RXN]]
+
** 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c]
−
== Reaction(s) not found ==
+
* With common name(s):
−
* [http://metacyc.org/META/NEW-IMAGE?object=COBALAMIN5PSYN-RXN COBALAMIN5PSYN-RXN]
+
** 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 H2O[c]
−
* [http://metacyc.org/META/NEW-IMAGE?object=COBINAMIDEKIN-RXN COBINAMIDEKIN-RXN]
+
 
−
* [http://metacyc.org/META/NEW-IMAGE?object=COBINPGUANYLYLTRANS-RXN COBINPGUANYLYLTRANS-RXN]
+
== Genes associated with this reaction  ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=DMBPPRIBOSYLTRANS-RXN DMBPPRIBOSYLTRANS-RXN]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8770 RXN-8770]
+
* [[Ec-03_003850]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-27_004020]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-08_003030]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-08_003020]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
* [[Ec-11_002820]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
** [[pantograph]]-[[aragem]]
 +
== Pathways  ==
 +
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* ECOCYC:
+
* RHEA:
−
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
−
{{#set: taxonomic range=TAX-1224}}
+
* LIGAND-RXN:
−
{{#set: common name=adenosylcobalamin salvage from cobinamide I}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
−
{{#set: common name=vitamin B12 biosynthesis}}
+
* UNIPROT:
−
{{#set: reaction found=1}}
+
** [http://www.uniprot.org/uniprot/P42393 P42393]
−
{{#set: reaction not found=6}}
+
** [http://www.uniprot.org/uniprot/P20577 P20577]
−
{{#set: completion rate=17.0}}
+
** [http://www.uniprot.org/uniprot/P18304 P18304]
 +
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
 +
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
 +
** [http://www.uniprot.org/uniprot/P20578 P20578]
 +
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
 +
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
 +
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
 +
** [http://www.uniprot.org/uniprot/P03964 P03964]
 +
** [http://www.uniprot.org/uniprot/P00910 P00910]
 +
** [http://www.uniprot.org/uniprot/P00909 P00909]
 +
** [http://www.uniprot.org/uniprot/P00911 P00911]
 +
** [http://www.uniprot.org/uniprot/P17217 P17217]
 +
** [http://www.uniprot.org/uniprot/P20409 P20409]
 +
** [http://www.uniprot.org/uniprot/P00937 P00937]
 +
** [http://www.uniprot.org/uniprot/P00908 P00908]
 +
** [http://www.uniprot.org/uniprot/P05328 P05328]
 +
** [http://www.uniprot.org/uniprot/P06531 P06531]
 +
** [http://www.uniprot.org/uniprot/P18483 P18483]
 +
** [http://www.uniprot.org/uniprot/P25170 P25170]
 +
** [http://www.uniprot.org/uniprot/P26938 P26938]
 +
** [http://www.uniprot.org/uniprot/P24773 P24773]
 +
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 +
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 +
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 +
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 +
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 +
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 +
** [http://www.uniprot.org/uniprot/P94327 P94327]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Aldolase-type TIM barrel}}
 +
{{#set: common name=Indole-3-glycerol phosphate synthase}}
 +
{{#set: common name=FIST domain, N-terminal}}
 +
{{#set: common name=indole-3-glycerol-phosphate synthase}}
 +
{{#set: ec number=EC-4.1.1.48}}
 +
{{#set: gene associated=Ec-03_003850|Ec-27_004020|Ec-08_003030|Ec-08_003020|Ec-11_002820}}
 +
{{#set: in pathway=TRPSYN-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 21:18, 17 March 2018

Reaction IGPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Aldolase-type TIM barrel
    • Indole-3-glycerol phosphate synthase
    • FIST domain, N-terminal
    • indole-3-glycerol-phosphate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-08_003540&oldid=12457"