Difference between revisions of "PWY-6638"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMP-DEHYDROG-RXN IMP-DEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** IMP dehydrogenas...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase beta su...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMP-DEHYDROG-RXN IMP-DEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** IMP dehydrogenase/GMP reductase
+
** Tryptophan synthase beta subunit-like PLP-dependent enzyme
−
** IMP dehydrogenase
+
** Tryptophan synthase (alpha / beta chains)
 +
** Tryptophan synthase, beta chain
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.205 EC-1.1.1.205]
+
** [http://enzyme.expasy.org/EC/4.2.1.122 EC-4.2.1.122]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[IMP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[SER]][c] '''+''' 1 [[INDOLE]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 IMP[c] '''+''' 1 H2O[c] '''<=>''' 1 XMP[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
+
** 1 L-serine[c] '''+''' 1 indole[c] '''=>''' 1 H2O[c] '''+''' 1 L-tryptophan[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-24_002410]]
+
* [[Ec-24_002360]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
−
***GO-TERM
+
***EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
* [[Ec-24_004010]]
−
* [[Ec-19_000030]]
+
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-00_008830]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-17_002680]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-27_001950]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-06_007490]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-01_012080]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-20_002800]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
***AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
+
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5695]], urate biosynthesis/inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
+
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11708 11708]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26434 26434]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01130 R01130]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P12268 P12268]
+
{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
−
** [http://www.uniprot.org/uniprot/P21620 P21620]
+
{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
−
** [http://www.uniprot.org/uniprot/P50098 P50098]
+
{{#set: common name=Tryptophan synthase, beta chain}}
−
** [http://www.uniprot.org/uniprot/P50097 P50097]
+
{{#set: ec number=EC-4.2.1.122}}
−
** [http://www.uniprot.org/uniprot/O26245 O26245]
+
{{#set: gene associated=Ec-24_002360|Ec-24_004010|Ec-00_008830|Ec-17_002680|Ec-27_001950|Ec-06_007490|Ec-01_012080|Ec-20_002800}}
−
** [http://www.uniprot.org/uniprot/Q9PAR5 Q9PAR5]
+
{{#set: in pathway=TRPSYN-PWY}}
−
** [http://www.uniprot.org/uniprot/P65172 P65172]
+
−
** [http://www.uniprot.org/uniprot/Q9X168 Q9X168]
+
−
** [http://www.uniprot.org/uniprot/Q9KTW3 Q9KTW3]
+
−
** [http://www.uniprot.org/uniprot/Q9YBU2 Q9YBU2]
+
−
** [http://www.uniprot.org/uniprot/Q9CIY6 Q9CIY6]
+
−
** [http://www.uniprot.org/uniprot/P21879 P21879]
+
−
** [http://www.uniprot.org/uniprot/P0ADG7 P0ADG7]
+
−
** [http://www.uniprot.org/uniprot/P56088 P56088]
+
−
** [http://www.uniprot.org/uniprot/P49058 P49058]
+
−
** [http://www.uniprot.org/uniprot/O58045 O58045]
+
−
** [http://www.uniprot.org/uniprot/Q9UY49 Q9UY49]
+
−
** [http://www.uniprot.org/uniprot/Q9PKM2 Q9PKM2]
+
−
** [http://www.uniprot.org/uniprot/Q9RT87 Q9RT87]
+
−
** [http://www.uniprot.org/uniprot/Q9JUD0 Q9JUD0]
+
−
** [http://www.uniprot.org/uniprot/Q59011 Q59011]
+
−
** [http://www.uniprot.org/uniprot/Q9PNN3 Q9PNN3]
+
−
** [http://www.uniprot.org/uniprot/P44334 P44334]
+
−
** [http://www.uniprot.org/uniprot/O67820 O67820]
+
−
** [http://www.uniprot.org/uniprot/P65167 P65167]
+
−
** [http://www.uniprot.org/uniprot/Q9ZL14 Q9ZL14]
+
−
** [http://www.uniprot.org/uniprot/Q9JZB5 Q9JZB5]
+
−
** [http://www.uniprot.org/uniprot/Q9HXM5 Q9HXM5]
+
−
** [http://www.uniprot.org/uniprot/P0C0H6 P0C0H6]
+
−
** [http://www.uniprot.org/uniprot/P42851 P42851]
+
−
** [http://www.uniprot.org/uniprot/P47996 P47996]
+
−
** [http://www.uniprot.org/uniprot/Q9RHG9 Q9RHG9]
+
−
** [http://www.uniprot.org/uniprot/P24547 P24547]
+
−
** [http://www.uniprot.org/uniprot/Q9RHG1 Q9RHG1]
+
−
** [http://www.uniprot.org/uniprot/P31002 P31002]
+
−
** [http://www.uniprot.org/uniprot/Q07152 Q07152]
+
−
** [http://www.uniprot.org/uniprot/P38697 P38697]
+
−
** [http://www.uniprot.org/uniprot/P50094 P50094]
+
−
** [http://www.uniprot.org/uniprot/P39567 P39567]
+
−
** [http://www.uniprot.org/uniprot/P50095 P50095]
+
−
** [http://www.uniprot.org/uniprot/Q49729 Q49729]
+
−
** [http://www.uniprot.org/uniprot/O14344 O14344]
+
−
** [http://www.uniprot.org/uniprot/O32912 O32912]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=IMP dehydrogenase/GMP reductase}}
+
−
{{#set: common name=IMP dehydrogenase}}
+
−
{{#set: ec number=EC-1.1.1.205}}
+
−
{{#set: gene associated=Ec-24_002410|Ec-19_000030}}
+
−
{{#set: in pathway=PWY-7221|PWY-5695|PWY-6596}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 21:21, 17 March 2018

Reaction RXN0-2382

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tryptophan synthase beta subunit-like PLP-dependent enzyme
    • Tryptophan synthase (alpha / beta chains)
    • Tryptophan synthase, beta chain
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-serine[c] + 1 indole[c] => 1 H2O[c] + 1 L-tryptophan[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6638&oldid=12654"