Difference between revisions of "P42-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phytoene synthase; ch...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4930 TAX-49...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4930 TAX-4930]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** Phytoene synthase; chloroplast precursor
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** ethylene biosynthesis V (engineered)
 
* Synonym(s):
 
* Synonym(s):
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** PSase
 
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** geranylgeranyl-diphosphate geranylgeranyltransferase
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''10''' reactions in the full pathway
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** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 2 geranylgeranyl diphosphate[c] '''=>''' 1 prephytoene diphosphate[c] '''+''' 1 diphosphate[c]
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*** [[Ec-27_004000]]
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*** [[Ec-26_004120]]
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== Genes associated with this reaction  ==
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*** [[Ec-14_005400]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* [[Ec-04_002810]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** [[orthology-aragem]]
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***EC-NUMBER
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* [[3PGAREARR-RXN]]
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== Pathways  ==
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** 7 associated gene(s):
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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*** [[Ec-24_002670]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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*** [[Ec-03_002170]]
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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*** [[Ec-27_000330]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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*** [[Ec-03_002160]]
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== Reconstruction information  ==
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*** [[Ec-01_000980]]
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* [[annotation]]:
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*** [[Ec-06_009930]]
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** [[pathwaytools]]:
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*** [[Ec-10_005410]]
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*** [[esiliculosus_genome]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[ACONITATEDEHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Ec-16_001000]]
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*** [[Ec-12_000170]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[ACONITATEHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Ec-12_000170]]
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*** [[Ec-16_001000]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[CITSYN-RXN]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[ISOCITDEH-RXN]]
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** 1 associated gene(s):
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*** [[Ec-11_003080]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PEPCARBOX-RXN]]
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** 1 associated gene(s):
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*** [[Ec-28_003470]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PHOTOALL-PWY]]
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** 0 associated gene:
 +
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12538 RXN-12538]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4930}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22296 22296]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=ethylene biosynthesis V (engineered)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
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{{#set: reaction found=8}}
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* UNIPROT:
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{{#set: total reaction=10}}
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** [http://www.uniprot.org/uniprot/P53609 P53609]
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{{#set: completion rate=80.0}}
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** [http://www.uniprot.org/uniprot/P37295 P37295]
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** [http://www.uniprot.org/uniprot/P22872 P22872]
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** [http://www.uniprot.org/uniprot/P53610 P53610]
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** [http://www.uniprot.org/uniprot/P53612 P53612]
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** [http://www.uniprot.org/uniprot/P17056 P17056]
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** [http://www.uniprot.org/uniprot/P49293 P49293]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Phytoene synthase; chloroplast precursor}}
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{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: gene associated=Ec-04_002810}}
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{{#set: in pathway=PWY-6287|PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Revision as of 22:22, 17 March 2018

Pathway PWY-7124

  • taxonomic range:
  • common name:
    • ethylene biosynthesis V (engineered)
  • Synonym(s):

Reaction(s) found

8 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=P42-PWY&oldid=12738"