Difference between revisions of "PWY0-1337"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GTP...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3941 PWY-3941] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
 
* common name:
 
* common name:
−
** β-alanine biosynthesis II
+
** GTP cyclohydrolase II
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.5.4.25 EC-3.5.4.25]
 
* Synonym(s):
 
* Synonym(s):
−
** β-alanine biosynthesis from proprionate
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''1''' reactions found over '''6''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-6383]]
+
** 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[FORMATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c]
−
== Reaction(s) not found ==
+
* With common name(s):
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.18-RXN 2.6.1.18-RXN]
+
** 1 GTP[c] '''+''' 3 H2O[c] '''=>''' 1 diphosphate[c] '''+''' 1 formate[c] '''+''' 2 H+[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c]
−
* [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN 3-HYDROXYPROPIONATE-DEHYDROGENASE-RXN]
+
 
−
* [http://metacyc.org/META/NEW-IMAGE?object=PROPCOASYN-RXN PROPCOASYN-RXN]
+
== Genes associated with this reaction  ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=PROPIONATE--COA-LIGASE-RXN PROPIONATE--COA-LIGASE-RXN]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6384 RXN-6384]
+
* [[Ec-27_004040]]
 +
** [[pantograph]]-[[aragem]]
 +
* [[Ec-02_005710]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
** [[pantograph]]-[[aragem]]
 +
== Pathways  ==
 +
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-33090}}
+
* LIGAND-RXN:
−
{{#set: taxonomic range=TAX-2}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
−
{{#set: common name=β-alanine biosynthesis II}}
+
* UNIPROT:
−
{{#set: common name=β-alanine biosynthesis from proprionate}}
+
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
−
{{#set: reaction found=1}}
+
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
−
{{#set: reaction not found=6}}
+
** [http://www.uniprot.org/uniprot/O08315 O08315]
−
{{#set: completion rate=17.0}}
+
** [http://www.uniprot.org/uniprot/O66679 O66679]
 +
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
 +
** [http://www.uniprot.org/uniprot/O25484 O25484]
 +
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
 +
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
 +
** [http://www.uniprot.org/uniprot/P43525 P43525]
 +
** [http://www.uniprot.org/uniprot/P17620 P17620]
 +
** [http://www.uniprot.org/uniprot/P38066 P38066]
 +
** [http://www.uniprot.org/uniprot/P50139 P50139]
 +
** [http://www.uniprot.org/uniprot/P74104 P74104]
 +
** [http://www.uniprot.org/uniprot/O24019 O24019]
 +
** [http://www.uniprot.org/uniprot/P51695 P51695]
 +
** [http://www.uniprot.org/uniprot/P50855 P50855]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=GTP cyclohydrolase II}}
 +
{{#set: ec number=EC-3.5.4.25}}
 +
{{#set: gene associated=Ec-27_004040|Ec-02_005710}}
 +
{{#set: in pathway=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 21:25, 17 March 2018

Reaction GTP-CYCLOHYDRO-II-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GTP cyclohydrolase II
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY0-1337&oldid=12907"