Difference between revisions of "CPD-236"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == * direction: ** REVERSIBLE * common name: ** Serine hydroxyme...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.72-RXN 2.1.1.72-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** EsV-1-129 * ec number...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.72-RXN 2.1.1.72-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Serine hydroxymethyltransferase
+
** EsV-1-129
−
** glycine hydroxymethyltransferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.2.1 EC-2.1.2.1]
+
** [http://enzyme.expasy.org/EC/2.1.1.72 EC-2.1.1.72]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THF-GLU-N]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLY]][c]
+
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[DNA-Adenines]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DNA-6-Methyl-Amino-Purines]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a tetrahydrofolate[c] '''+''' 1 L-serine[c] '''<=>''' 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 H2O[c] '''+''' 1 glycine[c]
+
**
−
 
+
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-14_004260]]
+
* [[Ec-06_005560]]
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-24_002640]]
+
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[GLYSYN-PWY]], glycine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-PWY GLYSYN-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 
−
** '''8''' reactions found over '''24''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
 
−
** '''12''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02961 R02961]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P35623 P35623]
+
** [http://www.uniprot.org/uniprot/Q7B7V5 Q7B7V5]
−
** [http://www.uniprot.org/uniprot/P34898 P34898]
+
** [http://www.uniprot.org/uniprot/P44414 P44414]
−
** [http://www.uniprot.org/uniprot/P34899 P34899]
+
** [http://www.uniprot.org/uniprot/Q57168 Q57168]
−
** [http://www.uniprot.org/uniprot/P34896 P34896]
+
** [http://www.uniprot.org/uniprot/Q9PIS1 Q9PIS1]
−
** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
+
** [http://www.uniprot.org/uniprot/P44431 P44431]
−
** [http://www.uniprot.org/uniprot/P34897 P34897]
+
** [http://www.uniprot.org/uniprot/P95510 P95510]
−
** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
+
** [http://www.uniprot.org/uniprot/P29749 P29749]
−
** [http://www.uniprot.org/uniprot/O23254 O23254]
+
** [http://www.uniprot.org/uniprot/P14385 P14385]
−
** [http://www.uniprot.org/uniprot/O53441 O53441]
+
** [http://www.uniprot.org/uniprot/P43422 P43422]
−
** [http://www.uniprot.org/uniprot/O08370 O08370]
+
** [http://www.uniprot.org/uniprot/Q47911 Q47911]
−
** [http://www.uniprot.org/uniprot/P43844 P43844]
+
** [http://www.uniprot.org/uniprot/P21311 P21311]
−
** [http://www.uniprot.org/uniprot/Q58992 Q58992]
+
** [http://www.uniprot.org/uniprot/P14751 P14751]
−
** [http://www.uniprot.org/uniprot/O66776 O66776]
+
** [http://www.uniprot.org/uniprot/P14827 P14827]
−
** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
+
** [http://www.uniprot.org/uniprot/P25240 P25240]
−
** [http://www.uniprot.org/uniprot/P47634 P47634]
+
** [http://www.uniprot.org/uniprot/P25239 P25239]
−
** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
+
** [http://www.uniprot.org/uniprot/P29538 P29538]
−
** [http://www.uniprot.org/uniprot/P56089 P56089]
+
** [http://www.uniprot.org/uniprot/Q03055 Q03055]
−
** [http://www.uniprot.org/uniprot/O53615 O53615]
+
** [http://www.uniprot.org/uniprot/Q51829 Q51829]
−
** [http://www.uniprot.org/uniprot/O83349 O83349]
+
** [http://www.uniprot.org/uniprot/P25238 P25238]
−
** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
+
** [http://www.uniprot.org/uniprot/P35516 P35516]
−
** [http://www.uniprot.org/uniprot/O51547 O51547]
+
** [http://www.uniprot.org/uniprot/P33563 P33563]
−
** [http://www.uniprot.org/uniprot/O84439 O84439]
+
** [http://www.uniprot.org/uniprot/P43641 P43641]
−
** [http://www.uniprot.org/uniprot/P24531 P24531]
+
** [http://www.uniprot.org/uniprot/P45454 P45454]
−
** [http://www.uniprot.org/uniprot/P39148 P39148]
+
** [http://www.uniprot.org/uniprot/P50193 P50193]
−
** [http://www.uniprot.org/uniprot/P24060 P24060]
+
** [http://www.uniprot.org/uniprot/Q56004 Q56004]
−
** [http://www.uniprot.org/uniprot/P37292 P37292]
+
** [http://www.uniprot.org/uniprot/P73682 P73682]
−
** [http://www.uniprot.org/uniprot/P34895 P34895]
+
** [http://www.uniprot.org/uniprot/P31118 P31118]
−
** [http://www.uniprot.org/uniprot/P34894 P34894]
+
** [http://www.uniprot.org/uniprot/O41063 O41063]
−
** [http://www.uniprot.org/uniprot/P49357 P49357]
+
** [http://www.uniprot.org/uniprot/P12427 P12427]
−
** [http://www.uniprot.org/uniprot/P49358 P49358]
+
** [http://www.uniprot.org/uniprot/P04392 P04392]
−
** [http://www.uniprot.org/uniprot/P50433 P50433]
+
** [http://www.uniprot.org/uniprot/P0AEE8 P0AEE8]
−
** [http://www.uniprot.org/uniprot/P37291 P37291]
+
** [http://www.uniprot.org/uniprot/P08957 P08957]
−
** [http://www.uniprot.org/uniprot/P78011 P78011]
+
** [http://www.uniprot.org/uniprot/P00472 P00472]
−
** [http://www.uniprot.org/uniprot/P77962 P77962]
+
** [http://www.uniprot.org/uniprot/P04393 P04393]
−
** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
+
** [http://www.uniprot.org/uniprot/P00473 P00473]
−
** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
+
** [http://www.uniprot.org/uniprot/P24582 P24582]
−
** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
+
** [http://www.uniprot.org/uniprot/P00474 P00474]
−
** [http://www.uniprot.org/uniprot/O23984 O23984]
+
** [http://www.uniprot.org/uniprot/P04043 P04043]
−
** [http://www.uniprot.org/uniprot/P0A825 P0A825]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P07511 P07511]
+
{{#set: common name=EsV-1-129}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: ec number=EC-2.1.1.72}}
−
{{#set: common name=Serine hydroxymethyltransferase}}
+
{{#set: gene associated=Ec-06_005560}}
−
{{#set: common name=glycine hydroxymethyltransferase}}
+
{{#set: in pathway=}}
−
{{#set: ec number=EC-2.1.2.1}}
+
−
{{#set: gene associated=Ec-14_004260|Ec-24_002640}}
+
−
{{#set: in pathway=PWY-2161|PWY-1622|PWY-3841|1CMET2-PWY|PWY-3661|GLYSYN-PWY|PWY-5497|PWY-2201|PWY-181|PWY-3661-1}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 21:29, 17 March 2018

Reaction 2.1.1.72-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • EsV-1-129
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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