Difference between revisions of "RXN-7913"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expa...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** GDP-mannose 4,6-dehydratase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.19 EC-3.6.1.19]
+
** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
−
** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dUTP[c] '''+''' 1 H2O[c] '''=>''' 1 dUMP[c] '''+''' 1 diphosphate[c] '''+''' 1 H+[c]
+
** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-6-deoxy-α-D-mannose[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-13_002810]]
+
* [[Ec-11_005510]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 +
** [[pantograph]]-[[aragem]]
 +
* [[Ec-28_003400]]
 +
** ESILICULOSUS_GENOME
 +
***GO-TERM
 
** [[pantograph]]-[[aragem]]
 
** [[pantograph]]-[[aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
+
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''14''' reactions found over '''17''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-aragem]]
−
*** [[aragem]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10248 10248]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
+
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
−
** [http://www.uniprot.org/uniprot/P33316 P33316]
+
−
** [http://www.uniprot.org/uniprot/O15923 O15923]
+
−
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
+
−
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
+
−
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
+
−
** [http://www.uniprot.org/uniprot/P43792 P43792]
+
−
** [http://www.uniprot.org/uniprot/P32518 P32518]
+
−
** [http://www.uniprot.org/uniprot/P68635 P68635]
+
−
** [http://www.uniprot.org/uniprot/P68634 P68634]
+
−
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
+
−
** [http://www.uniprot.org/uniprot/P03195 P03195]
+
−
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
+
−
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
+
−
** [http://www.uniprot.org/uniprot/P33317 P33317]
+
−
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
+
−
** [http://www.uniprot.org/uniprot/P43058 P43058]
+
−
** [http://www.uniprot.org/uniprot/O80091 O80091]
+
−
** [http://www.uniprot.org/uniprot/O36404 O36404]
+
−
** [http://www.uniprot.org/uniprot/O41033 O41033]
+
−
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
+
−
** [http://www.uniprot.org/uniprot/O39251 O39251]
+
−
** [http://www.uniprot.org/uniprot/O01934 O01934]
+
−
** [http://www.uniprot.org/uniprot/P10234 P10234]
+
−
** [http://www.uniprot.org/uniprot/P06968 P06968]
+
−
** [http://www.uniprot.org/uniprot/P09254 P09254]
+
−
** [http://www.uniprot.org/uniprot/P28892 P28892]
+
−
** [http://www.uniprot.org/uniprot/P28893 P28893]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.6.1.19}}
+
{{#set: common name=GDP-mannose 4,6-dehydratase}}
−
{{#set: ec number=EC-3.6.1.23}}
+
{{#set: ec number=EC-4.2.1.47}}
−
{{#set: gene associated=Ec-13_002810}}
+
{{#set: gene associated=Ec-11_005510|Ec-28_003400}}
−
{{#set: in pathway=PWY-7206|PWY-7184|PWY-7187|PWY-6545|PWY0-166}}
+
{{#set: in pathway=GDPRHAMSYN-PWY|PWY-66|PWY-5740|PWY-7573|PWY-5738|PWY-5739}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
−
{{#set: reconstruction source=aragem}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Revision as of 21:31, 17 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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