Difference between revisions of "RXN-1641"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate dehydrog...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE] == * smiles: ** CC4(OC(OP(=O)(...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC4(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))C(O)C(O)C(=O)4)
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* inchi key:
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** InChIKey=PNHLMHWWFOPQLK-BKUUWRAGSA-L
 
* common name:
 
* common name:
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** malate dehydrogenase (decarboxylating) (NAD+)
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** GDP-4-dehydro-6-deoxy-α-D-mannose
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
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** 585.314   
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** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3]
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* Synonym(s):
 
* Synonym(s):
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** GDP-4-keto-6-deoxymannose
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** GDP-4-keto-6-deoxy-α-D-mannose
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** GDP-4-dehydro-6-deoxy-α-D-talose
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** GDP-4-oxo-6-deoxy-α-D-mannose
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** GDP-4-dehydro-α-D-rhamnose
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** GDP-4-dehydro-6-deoxymannose
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[1.1.1.271-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[GDPMANDEHYDRA-RXN]]
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** 1 H+[c] '''+''' 1 oxaloacetate[c] '''=>''' 1 pyruvate[c] '''+''' 1 CO2[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-01_003680]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-07_002060]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-07_002070]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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== Pathways  ==
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* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339]
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** '''1''' reactions found over '''11''' reactions in the full pathway
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* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* BIGG : 37116
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15641 15641]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25243979 25243979]
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** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
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* HMDB : HMDB01346
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P13187 P13187]
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** [http://www.genome.jp/dbget-bin/www_bget?C01222 C01222]
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** [http://www.uniprot.org/uniprot/P13155 P13155]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P13156 P13156]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57964 57964]
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** [http://www.uniprot.org/uniprot/Q58628 Q58628]
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* METABOLIGHTS : MTBLC57964
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: smiles=CC4(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))C(O)C(O)C(=O)4)}}
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{{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}}
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{{#set: inchi key=InChIKey=PNHLMHWWFOPQLK-BKUUWRAGSA-L}}
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{{#set: ec number=EC-1.1.1.38}}
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{{#set: common name=GDP-4-dehydro-6-deoxy-α-D-mannose}}
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{{#set: ec number=EC-4.1.1.3}}
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{{#set: molecular weight=585.314    }}
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{{#set: gene associated=Ec-01_003680|Ec-07_002060|Ec-07_002070}}
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{{#set: common name=GDP-4-keto-6-deoxymannose|GDP-4-keto-6-deoxy-α-D-mannose|GDP-4-dehydro-6-deoxy-α-D-talose|GDP-4-oxo-6-deoxy-α-D-mannose|GDP-4-dehydro-α-D-rhamnose|GDP-4-dehydro-6-deoxymannose}}
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{{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY|PWY-6339|P184-PWY}}
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{{#set: consumed by=1.1.1.271-RXN}}
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{{#set: reconstruction category=annotation}}
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{{#set: produced by=GDPMANDEHYDRA-RXN}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Revision as of 21:33, 17 March 2018

Metabolite GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE

  • smiles:
    • CC4(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))C(O)C(O)C(=O)4)
  • inchi key:
    • InChIKey=PNHLMHWWFOPQLK-BKUUWRAGSA-L
  • common name:
    • GDP-4-dehydro-6-deoxy-α-D-mannose
  • molecular weight:
    • 585.314
  • Synonym(s):
    • GDP-4-keto-6-deoxymannose
    • GDP-4-keto-6-deoxy-α-D-mannose
    • GDP-4-dehydro-6-deoxy-α-D-talose
    • GDP-4-oxo-6-deoxy-α-D-mannose
    • GDP-4-dehydro-α-D-rhamnose
    • GDP-4-dehydro-6-deoxymannose

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • BIGG : 37116
  • PUBCHEM:
  • HMDB : HMDB01346
  • LIGAND-CPD:
  • CHEBI:
  • METABOLIGHTS : MTBLC57964
"CC4(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))C(O)C(O)C(=O)4)" cannot be used as a page name in this wiki.




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