Difference between revisions of "Ec-06 005070"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LUMAZINESYN-RXN LUMAZINESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 6,7-dimethyl-8-...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LUMAZINESYN-RXN LUMAZINESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 6,7-dimethyl-8-ribityllumazine synthase
+
** Phenylalanine--tRNA ligase
 +
** tRNA-binding arm
 +
** phenylalanine-tRNA ligase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.78 EC-2.5.1.78]
+
** [http://enzyme.expasy.org/EC/6.1.1.20 EC-6.1.1.20]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DIHYDROXY-BUTANONE-P]][c] '''+''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 2 [[WATER]][c]
+
** 1 [[PHE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PHE-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 1-deoxy-L-glycero-tetrulose 4-phosphate[c] '''+''' 1 5-amino-6-(D-ribitylamino)uracil[c] '''=>''' 1 phosphate[c] '''+''' 1 H+[c] '''+''' 1 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''+''' 2 H2O[c]
+
** 1 L-phenylalanine[c] '''+''' 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 a tRNAphe[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-phenylalanyl-[tRNAphe][c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-27_002140]]
+
* [[Ec-02_005310]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
−
***AUTOMATED-NAME-MATCH
+
***GO-TERM
 +
* [[Ec-06_008260]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-27_001900]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-15_003330]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19413 19413]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P94283 P94283]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
 +
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
 +
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
 +
** [http://www.uniprot.org/uniprot/P56145 P56145]
 +
** [http://www.uniprot.org/uniprot/O67620 O67620]
 +
** [http://www.uniprot.org/uniprot/O73984 O73984]
 +
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
 +
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
 +
** [http://www.uniprot.org/uniprot/P56146 P56146]
 +
** [http://www.uniprot.org/uniprot/O27545 O27545]
 +
** [http://www.uniprot.org/uniprot/O26837 O26837]
 +
** [http://www.uniprot.org/uniprot/O58391 O58391]
 +
** [http://www.uniprot.org/uniprot/O83938 O83938]
 +
** [http://www.uniprot.org/uniprot/P47436 P47436]
 +
** [http://www.uniprot.org/uniprot/O67087 O67087]
 +
** [http://www.uniprot.org/uniprot/O83059 O83059]
 +
** [http://www.uniprot.org/uniprot/O84843 O84843]
 +
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
 +
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
 +
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
 +
** [http://www.uniprot.org/uniprot/P47437 P47437]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
 +
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 +
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 +
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
 +
** [http://www.uniprot.org/uniprot/P43819 P43819]
 +
** [http://www.uniprot.org/uniprot/P94282 P94282]
 +
** [http://www.uniprot.org/uniprot/O84481 O84481]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
 +
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
 +
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 +
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
 +
** [http://www.uniprot.org/uniprot/P43820 P43820]
 +
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 +
** [http://www.uniprot.org/uniprot/P15434 P15434]
 +
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 +
** [http://www.uniprot.org/uniprot/P37984 P37984]
 +
** [http://www.uniprot.org/uniprot/P51346 P51346]
 +
** [http://www.uniprot.org/uniprot/P75563 P75563]
 +
** [http://www.uniprot.org/uniprot/P75564 P75564]
 +
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
 +
** [http://www.uniprot.org/uniprot/P95960 P95960]
 +
** [http://www.uniprot.org/uniprot/P95961 P95961]
 +
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 +
** [http://www.uniprot.org/uniprot/P08312 P08312]
 +
** [http://www.uniprot.org/uniprot/P07395 P07395]
 +
** [http://www.uniprot.org/uniprot/O42870 O42870]
 +
** [http://www.uniprot.org/uniprot/O13432 O13432]
 +
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 +
** [http://www.uniprot.org/uniprot/O42849 O42849]
 +
** [http://www.uniprot.org/uniprot/P17921 P17921]
 +
** [http://www.uniprot.org/uniprot/P17922 P17922]
 +
** [http://www.uniprot.org/uniprot/P15625 P15625]
 +
** [http://www.uniprot.org/uniprot/P08425 P08425]
 +
** [http://www.uniprot.org/uniprot/P15624 P15624]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=6,7-dimethyl-8-ribityllumazine synthase}}
+
{{#set: common name=Phenylalanine--tRNA ligase}}
−
{{#set: ec number=EC-2.5.1.78}}
+
{{#set: common name=tRNA-binding arm}}
−
{{#set: gene associated=Ec-27_002140}}
+
{{#set: common name=phenylalanine-tRNA ligase}}
−
{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
+
{{#set: ec number=EC-6.1.1.20}}
 +
{{#set: gene associated=Ec-02_005310|Ec-06_008260|Ec-27_001900|Ec-15_003330}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 21:34, 17 March 2018

Reaction PHENYLALANINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phenylalanine--tRNA ligase
    • tRNA-binding arm
    • phenylalanine-tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-phenylalanine[c] + 1 ATP[c] + 1 H+[c] + 1 a tRNAphe[c] => 1 diphosphate[c] + 1 an L-phenylalanyl-[tRNAphe][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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