Difference between revisions of "ExchangeSeed NITRATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ADIPATE-DEHYDROG-RXN 2-KETO-ADIPATE-DEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5682 RXN-5682] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ADIPATE-DEHYDROG-RXN 2-KETO-ADIPATE-DEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5682 RXN-5682] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.1.78 EC-1.3.1.78]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2K-ADIPATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[GLUTARYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[NADP]][c] '''+''' 1 [[CPD-659]][c] '''=>''' 1 [[NADPH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[TYR]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoadipate[c] '''+''' 1 coenzyme A[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 glutaryl-CoA[c] '''+''' 1 CO2[c]
+
** 1 NADP+[c] '''+''' 1 L-arogenate[c] '''=>''' 1 NADPH[c] '''+''' 1 CO2[c] '''+''' 1 L-tyrosine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-27_004160]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-25_000020]]
 
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5652]], 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5652 PWY-5652]
+
* [[PWY-3461]], L-tyrosine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3461 PWY-3461]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425]
+
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
−
* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[aragem]]
+
*** Tool: [[meneco]]
−
* [[annotation]]:
+
**** Comment: [[added for gapfilling]]
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30795 30795]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15417 15417]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01933 R01933]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00733 R00733]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=Ec-27_004160|Ec-25_000020}}
+
{{#set: ec number=EC-1.3.1.78}}
−
{{#set: in pathway=PWY-5652|PWY66-425|LYSINE-DEG1-PWY}}
+
{{#set: in pathway=PWY-3461}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=aragem}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Revision as of 21:37, 17 March 2018

Reaction RXN-5682

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADP+[c] + 1 L-arogenate[c] => 1 NADPH[c] + 1 CO2[c] + 1 L-tyrosine[c]

Genes associated with this reaction

Pathways

  • PWY-3461, L-tyrosine biosynthesis II: PWY-3461
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




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