Difference between revisions of "Ec-22 000030"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URIDINEKIN-RXN URIDINEKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoribulokina...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** agmatinase, partial **...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=URIDINEKIN-RXN URIDINEKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphoribulokinase/uridine kinase
+
** agmatinase, partial
 +
** Ureohydrolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.48 EC-2.7.1.48]
+
** [http://enzyme.expasy.org/EC/3.5.3.11 EC-3.5.3.11]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[URIDINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[UMP]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[UREA]][c] '''+''' 1 [[PUTRESCINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 uridine[c] '''=>''' 1 H+[c] '''+''' 1 UMP[c] '''+''' 1 ADP[c]
+
** 1 agmatine[c] '''+''' 1 H2O[c] '''=>''' 1 urea[c] '''+''' 1 putrescine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-26_002450]]
+
* [[Ec-17_004300]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 +
* [[Ec-17_004310]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 +
* [[Ec-22_003700]]
 +
** ESILICULOSUS_GENOME
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7193]], pyrimidine ribonucleosides salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7193 PWY-7193]
+
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16826 16826]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00964 R00964]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A8F4 P0A8F4]
+
** [http://www.uniprot.org/uniprot/P60654 P60654]
−
** [http://www.uniprot.org/uniprot/P47622 P47622]
+
** [http://www.uniprot.org/uniprot/P60653 P60653]
−
** [http://www.uniprot.org/uniprot/Q9CF21 Q9CF21]
+
** [http://www.uniprot.org/uniprot/P60651 P60651]
−
** [http://www.uniprot.org/uniprot/P44533 P44533]
+
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
−
** [http://www.uniprot.org/uniprot/P27515 P27515]
+
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Phosphoribulokinase/uridine kinase}}
+
{{#set: common name=agmatinase, partial}}
−
{{#set: ec number=EC-2.7.1.48}}
+
{{#set: common name=Ureohydrolase}}
−
{{#set: gene associated=Ec-26_002450}}
+
{{#set: ec number=EC-3.5.3.11}}
−
{{#set: in pathway=PWY-7193}}
+
{{#set: gene associated=Ec-17_004300|Ec-17_004310|Ec-22_003700}}
 +
{{#set: in pathway=PWY-6305|PWY0-823|PWY-40}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 21:45, 17 March 2018

Reaction AGMATIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • agmatinase, partial
    • Ureohydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 agmatine[c] + 1 H2O[c] => 1 urea[c] + 1 putrescine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway): PWY0-823
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I: PWY-40
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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