Difference between revisions of "RXN0-5222"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate mutas...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXINE-5P PYRIDOXINE-5P] == * smiles: ** CC1(=NC=C(COP([O-])(=O)[O-])C(=C(O)1)CO) * inchi k...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXINE-5P PYRIDOXINE-5P] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** CC1(=NC=C(COP([O-])(=O)[O-])C(=C(O)1)CO)
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* inchi key:
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** InChIKey=WHOMFKWHIQZTHY-UHFFFAOYSA-L
 
* common name:
 
* common name:
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** phosphoglycerate mutase
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** pyridoxine 5'-phosphate
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/5.4.2.12 EC-5.4.2.12]
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** 247.144   
 
* Synonym(s):
 
* Synonym(s):
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** pyridoxol 5'-phosphate
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** pyridoxine 5-phosphate
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** pyridoxine phosphate
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** pyridoxine-5P
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** pyridoxine-P
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** [5-hydroxy-4-(hydroxymethyl)-6-methylpyridin-3-yl]methyl phosphate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[PNPOXI-RXN]]
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** 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[PNKIN-RXN]]
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** 1 2-phospho-D-glycerate[c] '''<=>''' 1 3-phospho-D-glycerate[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-06_009930]]
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-10_005410]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-24_002670]]
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-03_002170]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-03_002160]]
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-27_000330]]
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-01_000980]]
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''12''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
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** '''10''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[aragem]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 447-05-2
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15901 15901]
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* BIGG : 35527
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=24794348 24794348]
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* UNIPROT:
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* HMDB : HMDB01319
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** [http://www.uniprot.org/uniprot/P30792 P30792]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P52832 P52832]
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** [http://www.genome.jp/dbget-bin/www_bget?C00627 C00627]
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** [http://www.uniprot.org/uniprot/P44865 P44865]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P30798 P30798]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58589 58589]
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** [http://www.uniprot.org/uniprot/P62707 P62707]
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* METABOLIGHTS : MTBLC58589
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** [http://www.uniprot.org/uniprot/P39773 P39773]
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{{#set: smiles=CC1(=NC=C(COP([O-])(=O)[O-])C(=C(O)1)CO)}}
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** [http://www.uniprot.org/uniprot/P47669 P47669]
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{{#set: inchi key=InChIKey=WHOMFKWHIQZTHY-UHFFFAOYSA-L}}
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** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3]
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{{#set: common name=pyridoxine 5'-phosphate}}
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** [http://www.uniprot.org/uniprot/P56196 P56196]
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{{#set: molecular weight=247.144    }}
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** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2]
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{{#set: common name=pyridoxol 5'-phosphate|pyridoxine 5-phosphate|pyridoxine phosphate|pyridoxine-5P|pyridoxine-P|[5-hydroxy-4-(hydroxymethyl)-6-methylpyridin-3-yl]methyl phosphate}}
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** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71]
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{{#set: consumed by=PNPOXI-RXN}}
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** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0]
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{{#set: produced by=PNKIN-RXN}}
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** [http://www.uniprot.org/uniprot/P00950 P00950]
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** [http://www.uniprot.org/uniprot/P18669 P18669]
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** [http://www.uniprot.org/uniprot/P15259 P15259]
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** [http://www.uniprot.org/uniprot/P16290 P16290]
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** [http://www.uniprot.org/uniprot/P35167 P35167]
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** [http://www.uniprot.org/uniprot/P33158 P33158]
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** [http://www.uniprot.org/uniprot/Q06464 Q06464]
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** [http://www.uniprot.org/uniprot/P36623 P36623]
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** [http://www.uniprot.org/uniprot/P35494 P35494]
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** [http://www.uniprot.org/uniprot/P37689 P37689]
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** [http://www.uniprot.org/uniprot/P35493 P35493]
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** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7]
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** [http://www.uniprot.org/uniprot/Q42908 Q42908]
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** [http://www.uniprot.org/uniprot/Q12326 Q12326]
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** [http://www.uniprot.org/uniprot/P53531 P53531]
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** [http://www.uniprot.org/uniprot/P51379 P51379]
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** [http://www.uniprot.org/uniprot/P75167 P75167]
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** [http://www.uniprot.org/uniprot/P72649 P72649]
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** [http://www.uniprot.org/uniprot/P74507 P74507]
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** [http://www.uniprot.org/uniprot/Q49006 Q49006]
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** [http://www.uniprot.org/uniprot/O24246 O24246]
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** [http://www.uniprot.org/uniprot/Q9X519 Q9X519]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=phosphoglycerate mutase}}
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{{#set: ec number=EC-5.4.2.12}}
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{{#set: gene associated=Ec-06_009930|Ec-10_005410|Ec-24_002670|Ec-03_002170|Ec-03_002160|Ec-27_000330|Ec-01_000980}}
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{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Revision as of 21:46, 17 March 2018

Metabolite PYRIDOXINE-5P

  • smiles:
    • CC1(=NC=C(COP([O-])(=O)[O-])C(=C(O)1)CO)
  • inchi key:
    • InChIKey=WHOMFKWHIQZTHY-UHFFFAOYSA-L
  • common name:
    • pyridoxine 5'-phosphate
  • molecular weight:
    • 247.144
  • Synonym(s):
    • pyridoxol 5'-phosphate
    • pyridoxine 5-phosphate
    • pyridoxine phosphate
    • pyridoxine-5P
    • pyridoxine-P
    • [5-hydroxy-4-(hydroxymethyl)-6-methylpyridin-3-yl]methyl phosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 447-05-2
  • BIGG : 35527
  • PUBCHEM:
  • HMDB : HMDB01319
  • LIGAND-CPD:
  • CHEBI:
  • METABOLIGHTS : MTBLC58589
"CC1(=NC=C(COP([O-])(=O)[O-])C(=C(O)1)CO)" cannot be used as a page name in this wiki.


"5-hydroxy-4-(hydroxymethyl)-6-methylpyridin-3-yl]methyl phosphate" cannot be used as a page name in this wiki.


Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN0-5222&oldid=14361"