Difference between revisions of "CPD-7671"

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(Created page with "Category:Gene == Gene Ec-19_005290 == * left end position: ** 5681524 * transcription direction: ** NEGATIVE * right end position: ** 5684775 * centisome position: ** 95.1...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] == * direction: ** REVERSIBLE * common name: ** xanthine dehydrogenase * ec numb...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-19_005290 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] ==
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* left end position:
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* direction:
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** 5681524
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** xanthine dehydrogenase
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* right end position:
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* ec number:
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** 5684775
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** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
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* centisome position:
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** 95.15694   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0154_0047
 
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** Esi0154_0047
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN]]
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* With identifiers:
 +
** 1 [[XANTHINE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[URATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
 +
* With common name(s):
 +
** 1 xanthine[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''<=>''' 1 urate[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Ec-20_000230]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[aragem]]
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* [[Ec-20_000210]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
 
** [[pantograph]]-[[aragem]]
 
** [[pantograph]]-[[aragem]]
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* [[OHACYL-COA-DEHYDROG-RXN]]
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== Pathways  ==
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** esiliculosus_genome
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* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
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***ec-number
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[RXN-10698]]
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* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
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** esiliculosus_genome
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** '''5''' reactions found over '''5''' reactions in the full pathway
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***ec-number
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* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
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* [[RXN-10702]]
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** '''4''' reactions found over '''17''' reactions in the full pathway
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** esiliculosus_genome
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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***ec-number
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[RXN-10703]]
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* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
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** esiliculosus_genome
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** '''8''' reactions found over '''24''' reactions in the full pathway
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***ec-number
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* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
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* [[RXN-11245]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** esiliculosus_genome
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* [[PWY-6999]], theophylline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6999 PWY-6999]
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***ec-number
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-11662]]
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* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
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** esiliculosus_genome
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** '''2''' reactions found over '''4''' reactions in the full pathway
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***ec-number
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* [[PWY-5695]], urate biosynthesis/inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
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* [[RXN-12490]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** esiliculosus_genome
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* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538]
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***ec-number
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[RXN-12570]]
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== Reconstruction information  ==
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** esiliculosus_genome
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* Category: [[orthology]]
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***ec-number
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** Source: [[orthology-aragem]]
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* [[RXN-12705]]
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*** Tool: [[pantograph]]
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** esiliculosus_genome
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* Category: [[annotation]]
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***ec-number
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-12750]]
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*** Tool: [[pathwaytools]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-16133]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17777]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17781]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17786]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17790]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17793]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17794]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17797]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17798]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-905]]
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** esiliculosus_genome
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***ec-number
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* [[RXN0-2044]]
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** esiliculosus_genome
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***ec-number
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== Pathways associated ==
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−
* [[P162-PWY]]
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* [[PWY-5177]]
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* [[PWY-6583]]
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* [[PWY-6883]]
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* [[PWY-5136]]
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* [[PWY-7778]]
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* [[PWY-7779]]
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* [[PWY-7094]]
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* [[PWY66-391]]
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* [[PWY-5789]]
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* [[PWY-81]]
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* [[CENTFERM-PWY]]
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* [[PWY-6945]]
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* [[PWY0-321]]
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* [[PWY-7007]]
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* [[PWY-6435]]
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* [[PWY-7216]]
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* [[PWY-1361]]
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* [[PWY-6946]]
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* [[FAO-PWY]]
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* [[PWY-6944]]
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* [[PWY-735]]
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* [[PWY-7401]]
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* [[PWY-6863]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=5681524}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16669 16669]
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{{#set: right end position=5684775}}
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* LIGAND-RXN:
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{{#set: centisome position=95.15694    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
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{{#set: common name=Esi_0154_0047|Esi0154_0047}}
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* UNIPROT:
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{{#set: reaction associated=3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN|OHACYL-COA-DEHYDROG-RXN|RXN-10698|RXN-10702|RXN-10703|RXN-11245|RXN-11662|RXN-12490|RXN-12570|RXN-12705|RXN-12750|RXN-16133|RXN-17777|RXN-17781|RXN-17786|RXN-17790|RXN-17793|RXN-17794|RXN-17797|RXN-17798|RXN-905|RXN0-2044}}
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** [http://www.uniprot.org/uniprot/Q62637 Q62637]
−
{{#set: pathway associated=P162-PWY|PWY-5177|PWY-6583|PWY-6883|PWY-5136|PWY-7778|PWY-7779|PWY-7094|PWY66-391|PWY-5789|PWY-81|CENTFERM-PWY|PWY-6945|PWY0-321|PWY-7007|PWY-6435|PWY-7216|PWY-1361|PWY-6946|FAO-PWY|PWY-6944|PWY-735|PWY-7401|PWY-6863}}
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** [http://www.uniprot.org/uniprot/P22811 P22811]
 +
** [http://www.uniprot.org/uniprot/Q12553 Q12553]
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** [http://www.uniprot.org/uniprot/P08793 P08793]
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** [http://www.uniprot.org/uniprot/P10351 P10351]
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** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
 +
** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
 +
** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
 +
** [http://www.uniprot.org/uniprot/P47990 P47990]
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** [http://www.uniprot.org/uniprot/P47989 P47989]
 +
** [http://www.uniprot.org/uniprot/Q00519 Q00519]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=xanthine dehydrogenase}}
 +
{{#set: ec number=EC-1.17.1.4}}
 +
{{#set: gene associated=Ec-20_000230|Ec-20_000210}}
 +
{{#set: in pathway=PWY-6607|SALVADEHYPOX-PWY|P164-PWY|PWY-6596|PWY-5497|PWY-6606|PWY-6999|PWY-6608|PWY-5695|PWY-6538}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 21:50, 17 March 2018

Reaction RXN0-901

  • direction:
    • REVERSIBLE
  • common name:
    • xanthine dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 xanthine[c] + 1 H2O[c] + 1 NAD+[c] <=> 1 urate[c] + 1 H+[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6607, guanosine nucleotides degradation I: PWY-6607
    • 2 reactions found over 4 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II: SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 4 reactions found over 17 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 8 reactions found over 24 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II: PWY-6606
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6999, theophylline degradation: PWY-6999
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5695, urate biosynthesis/inosine 5'-phosphate degradation: PWY-5695
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6538, caffeine degradation III (bacteria, via demethylation): PWY-6538
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=CPD-7671&oldid=14690"