Difference between revisions of "DIHYDROPTERIN-CH2OH-PP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADPREDUCT-RXN ADPREDUCT-RXN] == * direction: ** REVERSIBLE * common name: ** ADP reductase ** Ribon...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADPREDUCT-RXN ADPREDUCT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** ADP reductase
+
−
** Ribonucleoside-diphosphate reductase small chain
+
−
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
+
−
** EsV-1-128
+
−
** EsV-1-180
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
+
** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[DADP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''=>''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c] '''+''' 1 dADP[c] '''<=>''' 1 ADP[c] '''+''' 1 a reduced thioredoxin[c]
+
** 1 ATP[c] '''+''' 1 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine[c] '''=>''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-06_005120]]
+
* [[Ec-06_006870]]
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
 
** [[pantograph]]-[[aragem]]
 
** [[pantograph]]-[[aragem]]
−
* [[Ec-06_005570]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
* [[Ec-17_003700]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-21_002920]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-11_002180]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_000440]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-11_002170]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7220 PWY-7220]
+
* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227]
+
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-aragem]]
−
*** [[aragem]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28034 28034]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02017 R02017]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: common name=ADP reductase}}
+
** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
−
{{#set: common name=Ribonucleoside-diphosphate reductase small chain}}
+
** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
−
{{#set: common name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
+
** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
−
{{#set: common name=EsV-1-128}}
+
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
−
{{#set: common name=EsV-1-180}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.17.4.1}}
+
{{#set: ec number=EC-2.7.4.7}}
−
{{#set: gene associated=Ec-06_005120|Ec-06_005570|Ec-17_003700|Ec-21_002920|Ec-11_002180|Ec-19_000440|Ec-11_002170}}
+
{{#set: gene associated=Ec-06_006870}}
−
{{#set: in pathway=PWY-7220|PWY-7227}}
+
{{#set: in pathway=PWY-6910|PWY-7282|PWY-6890|PWY-7356|PWY-7357}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-aragem}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aragem}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 22:00, 17 March 2018

Reaction PYRIMSYN3-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6910, hydroxymethylpyrimidine salvage: PWY-6910
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: PWY-6890
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast): PWY-7356
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




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