Difference between revisions of "Ec-03 000140"

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(Created page with "Category:Gene == Gene Ec-27_005310 == * left end position: ** 4802685 * transcription direction: ** NEGATIVE * right end position: ** 4825664 * centisome position: ** 74.4...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** Aconitate...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-27_005310 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] ==
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* left end position:
+
* direction:
−
** 4802685
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** Aconitate hydratase,
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* right end position:
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** Aconitase/3-isopropylmalate dehydratase, swivel
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** 4825664
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−
* centisome position:
+
−
** 74.4613   
+
 
* Synonym(s):
 
* Synonym(s):
−
** Esi_0000_0226
 
−
** Esi0000_0226
 
  
−
== Reactions associated ==
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== Reaction Formula ==
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* [[ATPASE-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[CIT]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[CIS-ACONITATE]][c]
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***go-term
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* With common name(s):
−
== Pathways associated ==
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** 1 citrate[c] '''<=>''' 1 H2O[c] '''+''' 1 cis-aconitate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Ec-16_001000]]
 +
** ESILICULOSUS_GENOME
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***EC-NUMBER
 +
* [[Ec-12_000170]]
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** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''8''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=4802685}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
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{{#set: right end position=4825664}}
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* PIR:
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{{#set: centisome position=74.4613    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
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{{#set: common name=Esi_0000_0226|Esi0000_0226}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
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{{#set: reaction associated=ATPASE-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 +
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 +
* UNIPROT:
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** [http://www.uniprot.org/uniprot/P16276 P16276]
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** [http://www.uniprot.org/uniprot/Q01059 Q01059]
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** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 +
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
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** [http://www.uniprot.org/uniprot/P37032 P37032]
 +
** [http://www.uniprot.org/uniprot/P81291 P81291]
 +
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 +
** [http://www.uniprot.org/uniprot/P36683 P36683]
 +
** [http://www.uniprot.org/uniprot/O53166 O53166]
 +
** [http://www.uniprot.org/uniprot/P25516 P25516]
 +
** [http://www.uniprot.org/uniprot/P09339 P09339]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 +
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 +
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 +
** [http://www.uniprot.org/uniprot/P28271 P28271]
 +
** [http://www.uniprot.org/uniprot/P21399 P21399]
 +
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 +
** [http://www.uniprot.org/uniprot/P19414 P19414]
 +
** [http://www.uniprot.org/uniprot/P20004 P20004]
 +
** [http://www.uniprot.org/uniprot/P49609 P49609]
 +
** [http://www.uniprot.org/uniprot/P74582 P74582]
 +
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 +
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 +
** [http://www.uniprot.org/uniprot/O04916 O04916]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Aconitate hydratase,}}
 +
{{#set: common name=Aconitase/3-isopropylmalate dehydratase, swivel}}
 +
{{#set: gene associated=Ec-16_001000|Ec-12_000170}}
 +
{{#set: in pathway=FERMENTATION-PWY|PWY-5913|PWY-6969|PWY-5690|REDCITCYC|PWY-5392|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY66-398|PWY-6728|PWY-6549|PWY-7254|PWY-7124|PWY-5750|TCA}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 22:01, 17 March 2018

Reaction ACONITATEDEHYDR-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Aconitate hydratase,
    • Aconitase/3-isopropylmalate dehydratase, swivel
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 citrate[c] <=> 1 H2O[c] + 1 cis-aconitate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 8 reactions found over 16 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-5750, itaconate biosynthesis: PWY-5750
    • 3 reactions found over 4 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-03_000140&oldid=15442"