Difference between revisions of "CPD-10330"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10330 CPD-10330] == * smiles: ** C(C1(C(C(C(O1)O)O)O))O * inchi key: ** InChIKey=HMFHBZSHGG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNPOXI-RXN PNPOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxamine-phosphate ox...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10330 CPD-10330] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNPOXI-RXN PNPOXI-RXN] ==
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* smiles:
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* direction:
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** C(C1(C(C(C(O1)O)O)O))O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=HMFHBZSHGGEWLO-AIHAYLRMSA-N
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* common name:
 
* common name:
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** α-D-ribofuranose
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** pyridoxamine-phosphate oxidase
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* molecular weight:
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* ec number:
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** 150.131   
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** [http://enzyme.expasy.org/EC/1.4.3.5 EC-1.4.3.5]
 
* Synonym(s):
 
* Synonym(s):
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** α D-ribose
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RIBOKIN-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PYRIDOXINE-5P]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-14904]]
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** 1 pyridoxine 5'-phosphate[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 pyridoxal 5'-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-01_000340]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-09_002030]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-10_006030]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=445894 445894]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15149 15149]
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* CHEMSPIDER:
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* LIGAND-RXN:
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** [http://www.chemspider.com/Chemical-Structure.5575.html 5575]
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** [http://www.genome.jp/dbget-bin/www_bget?R00278 R00278]
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* CHEBI:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=45506 45506]
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{{#set: common name=pyridoxamine-phosphate oxidase}}
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* HMDB : HMDB00283
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{{#set: ec number=EC-1.4.3.5}}
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{{#set: smiles=C(C1(C(C(C(O1)O)O)O))O}}
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{{#set: gene associated=Ec-01_000340|Ec-09_002030|Ec-10_006030}}
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{{#set: inchi key=InChIKey=HMFHBZSHGGEWLO-AIHAYLRMSA-N}}
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{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY|PYRIDOXSYN-PWY}}
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{{#set: common name=α-D-ribofuranose}}
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{{#set: reconstruction category=annotation}}
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{{#set: molecular weight=150.131    }}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: common name=α D-ribose}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: consumed by=RIBOKIN-RXN}}
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{{#set: reversible reaction associated=RXN-14904}}
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Revision as of 13:10, 21 March 2018

Reaction PNPOXI-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pyridoxamine-phosphate oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants): PWY-7204
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 5 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I: PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I: PYRIDOXSYN-PWY
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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