Difference between revisions of "RXN-12575"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GAMA-TOCOPHEROL GAMA-TOCOPHEROL] == * smiles: ** CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=CC(O)=C(C)C(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GAMA-TOCOPHEROL GAMA-TOCOPHEROL] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] ==
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* smiles:
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* direction:
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** CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=CC(O)=C(C)C(=C(O1)2)C))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=QUEDXNHFTDJVIY-DQCZWYHMSA-N
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* common name:
 
* common name:
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** γ-tocopherol
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** Aminotransferase, class I/classII
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* molecular weight:
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* ec number:
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** 416.686   
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** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50]
 
* Synonym(s):
 
* Synonym(s):
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** 7,8-dimethyltocol
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[TOCOPHEROL-O-METHYLTRANSFERASE-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PALMITYL-COA]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[RXN-2543]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 palmitoyl-CoA[c] '''+''' 1 L-serine[c] '''+''' 1 H+[c] '''=>''' 1 coenzyme A[c] '''+''' 1 3-dehydrosphinganine[c] '''+''' 1 CO2[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-24_002690]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-11_004190]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
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** '''1''' reactions found over '''13''' reactions in the full pathway
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* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=92729 92729]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761]
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* CHEMSPIDER:
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* LIGAND-RXN:
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** [http://www.chemspider.com/Chemical-Structure.83708.html 83708]
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** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=18185 18185]
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** [http://www.uniprot.org/uniprot/P25045 P25045]
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* METABOLIGHTS : MTBLC18185
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** [http://www.uniprot.org/uniprot/O15270 O15270]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P48241 P48241]
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** [http://www.genome.jp/dbget-bin/www_bget?C02483 C02483]
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** [http://www.uniprot.org/uniprot/Q09925 Q09925]
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{{#set: smiles=CC(C)CCCC(C)CCCC(C)CCCC1(C)(CCC2(=CC(O)=C(C)C(=C(O1)2)C))}}
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** [http://www.uniprot.org/uniprot/P40970 P40970]
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{{#set: inchi key=InChIKey=QUEDXNHFTDJVIY-DQCZWYHMSA-N}}
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** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
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{{#set: common name=γ-tocopherol}}
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** [http://www.uniprot.org/uniprot/Q20375 Q20375]
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{{#set: molecular weight=416.686    }}
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** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
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{{#set: common name=7,8-dimethyltocol}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: consumed by=TOCOPHEROL-O-METHYLTRANSFERASE-RXN}}
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{{#set: common name=Aminotransferase, class I/classII}}
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{{#set: produced by=RXN-2543}}
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{{#set: ec number=EC-2.3.1.50}}
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{{#set: gene associated=Ec-24_002690|Ec-11_004190}}
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{{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:11, 21 March 2018

Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Aminotransferase, class I/classII
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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