Difference between revisions of "RXN-16065"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINE SPERMIDINE] == * smiles: ** C([N+])CC[N+]CCCC[N+] * inchi key: ** InChIKey=ATHGHQPFG...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINE SPERMIDINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C([N+])CC[N+]CCCC[N+]
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* inchi key:
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** InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-Q
 
* common name:
 
* common name:
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** Lysyl-tRNA Synthetase
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** spermidine
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** Lysyl-tRNA ligase
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* molecular weight:
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* ec number:
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** 148.271   
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** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
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* Synonym(s):
 
* Synonym(s):
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** N-(3-aminopropyl)butane-1,4-diamine
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[SPERMINE-SYNTHASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c]
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* [[RXN-13414]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 H+[c] '''+''' 1 L-lysine[c] '''+''' 1 a tRNAlys[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-lysyl-[tRNAlys][c]
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== Reaction(s) of unknown directionality ==
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* [[SPERMIDINESYN-RXN]]
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== Genes associated with this reaction  ==
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* [[2.5.1.46-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-19_000900]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-01_005790]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* CAS : 124-20-9
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** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
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* BIGG : 34593
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* UNIPROT:
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P41258 P41258]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6992097 6992097]
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** [http://www.uniprot.org/uniprot/P46861 P46861]
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* HMDB : HMDB01257
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** [http://www.uniprot.org/uniprot/P47382 P47382]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/O57963 O57963]
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** [http://www.genome.jp/dbget-bin/www_bget?C00315 C00315]
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** [http://www.uniprot.org/uniprot/O51603 O51603]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
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** [http://www.chemspider.com/Chemical-Structure.5360248.html 5360248]
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** [http://www.uniprot.org/uniprot/O83650 O83650]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57834 57834]
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** [http://www.uniprot.org/uniprot/P43825 P43825]
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* METABOLIGHTS : MTBLC57834
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** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
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{{#set: smiles=C([N+])CC[N+]CCCC[N+]}}
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** [http://www.uniprot.org/uniprot/O84786 O84786]
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{{#set: inchi key=InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-Q}}
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** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
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{{#set: common name=spermidine}}
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** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
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{{#set: molecular weight=148.271    }}
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** [http://www.uniprot.org/uniprot/P56126 P56126]
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{{#set: common name=N-(3-aminopropyl)butane-1,4-diamine}}
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** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
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{{#set: consumed by=SPERMINE-SYNTHASE-RXN|RXN-13414}}
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** [http://www.uniprot.org/uniprot/O67258 O67258]
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{{#set: reversible reaction associated=SPERMIDINESYN-RXN|2.5.1.46-RXN}}
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** [http://www.uniprot.org/uniprot/O84002 O84002]
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** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
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** [http://www.uniprot.org/uniprot/P32048 P32048]
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** [http://www.uniprot.org/uniprot/P37879 P37879]
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** [http://www.uniprot.org/uniprot/Q48986 Q48986]
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** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
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** [http://www.uniprot.org/uniprot/P37477 P37477]
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** [http://www.uniprot.org/uniprot/P75500 P75500]
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** [http://www.uniprot.org/uniprot/P95970 P95970]
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** [http://www.uniprot.org/uniprot/P73443 P73443]
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** [http://www.uniprot.org/uniprot/P15180 P15180]
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** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
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** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
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** [http://www.uniprot.org/uniprot/Q43776 Q43776]
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** [http://www.uniprot.org/uniprot/O74059 O74059]
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** [http://www.uniprot.org/uniprot/O30522 O30522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Lysyl-tRNA Synthetase}}
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{{#set: common name=Lysyl-tRNA ligase}}
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{{#set: ec number=EC-6.1.1.6}}
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{{#set: gene associated=Ec-19_000900|Ec-01_005790}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 13:12, 21 March 2018

Metabolite SPERMIDINE

  • smiles:
    • C([N+])CC[N+]CCCC[N+]
  • inchi key:
    • InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-Q
  • common name:
    • spermidine
  • molecular weight:
    • 148.271
  • Synonym(s):
    • N-(3-aminopropyl)butane-1,4-diamine

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 124-20-9
  • BIGG : 34593
  • PUBCHEM:
  • HMDB : HMDB01257
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC57834
"C([N+])CC[N+]CCCC[N+" cannot be used as a page name in this wiki.




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