Difference between revisions of "RXN-16065"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINE SPERMIDINE] == * smiles: ** C([N+])CC[N+]CCCC[N+] * inchi key: ** InChIKey=ATHGHQPFG...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINE SPERMIDINE] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** C([N+])CC[N+]CCCC[N+]
 +
* inchi key:
 +
** InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-Q
 
* common name:
 
* common name:
−
** Lysyl-tRNA Synthetase
+
** spermidine
−
** Lysyl-tRNA ligase
+
* molecular weight:
−
* ec number:
+
** 148.271   
−
** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** N-(3-aminopropyl)butane-1,4-diamine
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[SPERMINE-SYNTHASE-RXN]]
−
** 1 [[PROTON]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c]
+
* [[RXN-13414]]
−
* With common name(s):
+
== Reaction(s) known to produce the compound ==
−
** 1 H+[c] '''+''' 1 L-lysine[c] '''+''' 1 a tRNAlys[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-lysyl-[tRNAlys][c]
+
== Reaction(s) of unknown directionality ==
−
 
+
* [[SPERMIDINESYN-RXN]]
−
== Genes associated with this reaction  ==
+
* [[2.5.1.46-RXN]]
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Ec-19_000900]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-01_005790]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* CAS : 124-20-9
−
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
+
* BIGG : 34593
−
* UNIPROT:
+
* PUBCHEM:
−
** [http://www.uniprot.org/uniprot/P41258 P41258]
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6992097 6992097]
−
** [http://www.uniprot.org/uniprot/P46861 P46861]
+
* HMDB : HMDB01257
−
** [http://www.uniprot.org/uniprot/P47382 P47382]
+
* LIGAND-CPD:
−
** [http://www.uniprot.org/uniprot/O57963 O57963]
+
** [http://www.genome.jp/dbget-bin/www_bget?C00315 C00315]
−
** [http://www.uniprot.org/uniprot/O51603 O51603]
+
* CHEMSPIDER:
−
** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
+
** [http://www.chemspider.com/Chemical-Structure.5360248.html 5360248]
−
** [http://www.uniprot.org/uniprot/O83650 O83650]
+
* CHEBI:
−
** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57834 57834]
−
** [http://www.uniprot.org/uniprot/P43825 P43825]
+
* METABOLIGHTS : MTBLC57834
−
** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
+
{{#set: smiles=C([N+])CC[N+]CCCC[N+]}}
−
** [http://www.uniprot.org/uniprot/O84786 O84786]
+
{{#set: inchi key=InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-Q}}
−
** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
+
{{#set: common name=spermidine}}
−
** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
+
{{#set: molecular weight=148.271    }}
−
** [http://www.uniprot.org/uniprot/P56126 P56126]
+
{{#set: common name=N-(3-aminopropyl)butane-1,4-diamine}}
−
** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
+
{{#set: consumed by=SPERMINE-SYNTHASE-RXN|RXN-13414}}
−
** [http://www.uniprot.org/uniprot/O67258 O67258]
+
{{#set: reversible reaction associated=SPERMIDINESYN-RXN|2.5.1.46-RXN}}
−
** [http://www.uniprot.org/uniprot/O84002 O84002]
+
−
** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
+
−
** [http://www.uniprot.org/uniprot/P32048 P32048]
+
−
** [http://www.uniprot.org/uniprot/P37879 P37879]
+
−
** [http://www.uniprot.org/uniprot/Q48986 Q48986]
+
−
** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
+
−
** [http://www.uniprot.org/uniprot/P37477 P37477]
+
−
** [http://www.uniprot.org/uniprot/P75500 P75500]
+
−
** [http://www.uniprot.org/uniprot/P95970 P95970]
+
−
** [http://www.uniprot.org/uniprot/P73443 P73443]
+
−
** [http://www.uniprot.org/uniprot/P15180 P15180]
+
−
** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
+
−
** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
+
−
** [http://www.uniprot.org/uniprot/Q43776 Q43776]
+
−
** [http://www.uniprot.org/uniprot/O74059 O74059]
+
−
** [http://www.uniprot.org/uniprot/O30522 O30522]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Lysyl-tRNA Synthetase}}
+
−
{{#set: common name=Lysyl-tRNA ligase}}
+
−
{{#set: ec number=EC-6.1.1.6}}
+
−
{{#set: gene associated=Ec-19_000900|Ec-01_005790}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 14:12, 21 March 2018

Metabolite SPERMIDINE

  • smiles:
    • C([N+])CC[N+]CCCC[N+]
  • inchi key:
    • InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-Q
  • common name:
    • spermidine
  • molecular weight:
    • 148.271
  • Synonym(s):
    • N-(3-aminopropyl)butane-1,4-diamine

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 124-20-9
  • BIGG : 34593
  • PUBCHEM:
  • HMDB : HMDB01257
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC57834
"C([N+])CC[N+]CCCC[N+" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16065&oldid=16535"