Difference between revisions of "CPD-7087"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-674 CPD-674] == * smiles: ** C(=O)([O-])C=CC1(=CC=CC=C1) * inchi key: ** InChIKey=WBYWAXJHA...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribo...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-674 CPD-674] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
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* smiles:
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* direction:
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** C(=O)([O-])C=CC1(=CC=CC=C1)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=WBYWAXJHAXSJNI-VOTSOKGWSA-M
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* common name:
 
* common name:
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** trans-cinnamate
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** phosphoribosylamine-glycine ligase
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* molecular weight:
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* ec number:
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** 147.153   
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** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
 
* Synonym(s):
 
* Synonym(s):
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** β-phenylacrylic acid
 
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** 3-phenyl-2-propenoic acid
 
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** cinnamic acid
 
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** cinnamate
 
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** trans-cinnamic acid
 
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** (E)-cinnamate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-2001]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 glycine[c] '''+''' 1 5-phospho-β-D-ribosylamine[c] '''=>''' 1 H+[c] '''+''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-12_005490]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 140-10-3
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* RHEA:
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* BIGG : 34938
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5957728 5957728]
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** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
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* HMDB : HMDB00930
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P07244 P07244]
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** [http://www.genome.jp/dbget-bin/www_bget?C00423 C00423]
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** [http://www.uniprot.org/uniprot/Q58347 Q58347]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P12039 P12039]
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** [http://www.chemspider.com/Chemical-Structure.4762929.html 4762929]
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** [http://www.uniprot.org/uniprot/P21872 P21872]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P15640 P15640]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15669 15669]
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** [http://www.uniprot.org/uniprot/P00967 P00967]
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* METABOLIGHTS : MTBLC15669
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** [http://www.uniprot.org/uniprot/P16340 P16340]
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{{#set: smiles=C(=O)([O-])C=CC1(=CC=CC=C1)}}
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** [http://www.uniprot.org/uniprot/P22102 P22102]
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{{#set: inchi key=InChIKey=WBYWAXJHAXSJNI-VOTSOKGWSA-M}}
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** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
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{{#set: common name=trans-cinnamate}}
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** [http://www.uniprot.org/uniprot/P43845 P43845]
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{{#set: molecular weight=147.153    }}
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** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
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{{#set: common name=β-phenylacrylic acid|3-phenyl-2-propenoic acid|cinnamic acid|cinnamate|trans-cinnamic acid|(E)-cinnamate}}
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** [http://www.uniprot.org/uniprot/Q64737 Q64737]
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{{#set: consumed by=RXN-2001}}
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** [http://www.uniprot.org/uniprot/P20772 P20772]
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** [http://www.uniprot.org/uniprot/P26977 P26977]
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** [http://www.uniprot.org/uniprot/Q59492 Q59492]
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** [http://www.uniprot.org/uniprot/P74232 P74232]
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** [http://www.uniprot.org/uniprot/Q42804 Q42804]
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** [http://www.uniprot.org/uniprot/P52421 P52421]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylamine-glycine ligase}}
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{{#set: ec number=EC-6.3.4.13}}
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{{#set: gene associated=Ec-12_005490}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:15, 21 March 2018

Reaction GLYRIBONUCSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylamine-glycine ligase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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