Difference between revisions of "Ec-05 006330"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9386 RXN-9386] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribosomal protein L25/Gln-tRN...")
(Created page with "Category:Gene == Gene Ec-14_004260 == * left end position: ** 3966380 * transcription direction: ** POSITIVE * right end position: ** 3978122 * centisome position: ** 60.4...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9386 RXN-9386] ==
+
== Gene Ec-14_004260 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 3966380
−
* common name:
+
* transcription direction:
−
** Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
+
** POSITIVE
−
** Glutamyl-tRNA Synthetase, chloroplast precursor
+
* right end position:
−
* ec number:
+
** 3978122
−
** [http://enzyme.expasy.org/EC/6.1.1.24 EC-6.1.1.24]
+
* centisome position:
 +
** 60.459167   
 
* Synonym(s):
 
* Synonym(s):
 +
** Esi_0099_0047
 +
** Esi0099_0047
 +
** SHMT2
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[GLYOHMETRANS-RXN]]
−
** 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLN-tRNAs]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[L-glutamyl-tRNAGln]][c]
+
** Source: [[annotation-esiliculosus_genome]]
−
* With common name(s):
+
*** Assignment: go-term
−
** 1 H+[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAgln[c] '''+''' 1 L-glutamate[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-glutamyl-[tRNAGln][c]
+
* Reaction: [[RXN0-5234]]
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Ec-06_008480]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-15_002360]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-5921]], glutaminyl-tRNAgln biosynthesis via transamidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5921 PWY-5921]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
 +
== Pathways associated ==
 +
* [[PWY-2161]]
 +
* [[PWY-1622]]
 +
* [[PWY-3841]]
 +
* [[1CMET2-PWY]]
 +
* [[PWY-3661]]
 +
* [[GLYSYN-PWY]]
 +
* [[PWY-5497]]
 +
* [[PWY-2201]]
 +
* [[PWY-181]]
 +
* [[PWY-3661-1]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: left end position=3966380}}
−
{{#set: common name=Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain}}
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: common name=Glutamyl-tRNA Synthetase, chloroplast precursor}}
+
{{#set: right end position=3978122}}
−
{{#set: ec number=EC-6.1.1.24}}
+
{{#set: centisome position=60.459167    }}
−
{{#set: gene associated=Ec-06_008480|Ec-15_002360}}
+
{{#set: common name=Esi_0099_0047|Esi0099_0047|SHMT2}}
−
{{#set: in pathway=PWY-5921}}
+
{{#set: reaction associated=GLYOHMETRANS-RXN|RXN0-5234}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: pathway associated=PWY-2161|PWY-1622|PWY-3841|1CMET2-PWY|PWY-3661|GLYSYN-PWY|PWY-5497|PWY-2201|PWY-181|PWY-3661-1}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 13:15, 21 March 2018

Gene Ec-14_004260

  • left end position:
    • 3966380
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3978122
  • centisome position:
    • 60.459167
  • Synonym(s):
    • Esi_0099_0047
    • Esi0099_0047
    • SHMT2

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-05_006330&oldid=17008"