Difference between revisions of "SsRNAs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.99.1.3-RXN 4.99.1.3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** sirohydrochlorin coba...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPKIN-RXN CDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate ki...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.99.1.3-RXN 4.99.1.3-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPKIN-RXN CDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** sirohydrochlorin cobaltochelatase
+
** nucleoside diphosphate kinase
 +
** Nucleoside diphosphate kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.99.1.3 EC-4.99.1.3]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SIROHYDROCHLORIN]][c] '''+''' 1 [[CO+2]][c] '''=>''' 1 [[COBALT-SIROHYDROCHLORIN]][c] '''+''' 2 [[PROTON]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[CDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CTP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 sirohydrochlorin[c] '''+''' 1 Co2+[c] '''=>''' 1 cobalt-sirohydrochlorin[c] '''+''' 2 H+[c]
+
** 1 ATP[c] '''+''' 1 CDP[c] '''=>''' 1 ADP[c] '''+''' 1 CTP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-10_002430]]
+
* Gene: [[Ec-26_003930]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: GO-TERM
 +
* Gene: [[Ec-11_005170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-03_001380]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-22_003280]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-07_000140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-04_001140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-11_004330]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
+
* [[PWY-7205]], CMP phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7205 PWY-7205]
−
** '''3''' reactions found over '''15''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15893 15893]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25237 25237]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05807 R05807]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00570 R00570]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=sirohydrochlorin cobaltochelatase}}
+
{{#set: common name=nucleoside diphosphate kinase}}
−
{{#set: ec number=EC-4.99.1.3}}
+
{{#set: common name=Nucleoside diphosphate kinase}}
−
{{#set: gene associated=Ec-10_002430}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: in pathway=PWY-7377}}
+
{{#set: gene associated=Ec-26_003930|Ec-11_005170|Ec-03_001380|Ec-22_003280|Ec-07_000140|Ec-04_001140|Ec-11_004330}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-7205}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:15, 21 March 2018

Reaction CDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside diphosphate kinase
    • Nucleoside diphosphate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 CDP[c] => 1 ADP[c] + 1 CTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7205, CMP phosphorylation: PWY-7205
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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