Difference between revisions of "PWY-5135"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.18-RXN 1.14.11.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phytanoyl-CoA dio...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] == * direction: ** REVERSIBLE * common nam...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.18-RXN 1.14.11.18-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Phytanoyl-CoA dioxygenase
+
** Glutamate dehydrogenase (NAD-dependent)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.14.11.18 EC-1.14.11.18]
+
** [http://enzyme.expasy.org/EC/1.4.1.2 EC-1.4.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-206]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[2-HYDROXYPHYTANOYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxygen[c] '''+''' 1 phytanoyl-CoA[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 succinate[c] '''+''' 1 2-hydroxyphytanoyl-CoA[c] '''+''' 1 CO2[c]
+
** 1 NAD+[c] '''+''' 1 L-glutamate[c] '''+''' 1 H2O[c] '''<=>''' 1 ammonium[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-23_003040]]
+
* Gene: [[Ec-12_008040]]
−
** ESILICULOSUS_GENOME
+
** Source: [[orthology-aragem]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Ec-06_008240]]
−
* [[Ec-01_001740]]
+
** Source: [[orthology-aragem]]
−
** ESILICULOSUS_GENOME
+
* Gene: [[Ec-06_001980]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-22_003660]]
+
*** Assignment: EC-NUMBER
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-01_011990]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEG1-PWY GLUTAMATE-DEG1-PWY]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 +
** '''4''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7126]], ethylene biosynthesis IV (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16065 16065]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15133 15133]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05722 R05722]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=Phytanoyl-CoA dioxygenase}}
+
** [http://www.uniprot.org/uniprot/P20016 P20016]
−
{{#set: ec number=EC-1.14.11.18}}
+
** [http://www.uniprot.org/uniprot/P28997 P28997]
−
{{#set: gene associated=Ec-23_003040|Ec-01_001740|Ec-22_003660|Ec-01_011990}}
+
** [http://www.uniprot.org/uniprot/P41755 P41755]
−
{{#set: in pathway=}}
+
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P00365 P00365]
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
** [http://www.uniprot.org/uniprot/P93541 P93541]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P80319 P80319]
 +
** [http://www.uniprot.org/uniprot/P24295 P24295]
 +
** [http://www.uniprot.org/uniprot/P27346 P27346]
 +
** [http://www.uniprot.org/uniprot/P33327 P33327]
 +
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
 +
** [http://www.uniprot.org/uniprot/O04937 O04937]
 +
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
 +
** [http://www.uniprot.org/uniprot/O74024 O74024]
 +
** [http://www.uniprot.org/uniprot/O59650 O59650]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Glutamate dehydrogenase (NAD-dependent)}}
 +
{{#set: ec number=EC-1.4.1.2}}
 +
{{#set: gene associated=Ec-12_008040|Ec-06_008240|Ec-06_001980}}
 +
{{#set: in pathway=GLUTAMATE-DEG1-PWY|ALACAT2-PWY|P162-PWY|PWY-5022|PWY-6728|PWY-7126}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:17, 21 March 2018

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Glutamate dehydrogenase (NAD-dependent)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 L-glutamate[c] + 1 H2O[c] <=> 1 ammonium[c] + 1 2-oxoglutarate[c] + 1 NADH[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I: GLUTAMATE-DEG1-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate): ALACAT2-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V: PWY-5022
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered): PWY-7126
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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