Difference between revisions of "Ec-23 002050"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PREPHENATE-TRANSAMINE-RXN PREPHENATE-TRANSAMINE-RXN] == * direction: ** REVERSIBLE * ec number: **...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PREPHENATE-TRANSAMINE-RXN PREPHENATE-TRANSAMINE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** REVERSIBLE
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* common name:
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* ec number:
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** formaldehyde assimilation II (RuMP Cycle)
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** [http://enzyme.expasy.org/EC/2.6.1.79 EC-2.6.1.79]
 
* Synonym(s):
 
* Synonym(s):
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** ribulose monophosphate cycle
 
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** formaldehyde assimilation
 
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** RuMP pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[1TRANSKETO-RXN]]
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** 1 [[CPD-659]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[PREPHENATE]][c] '''+''' 1 [[GLT]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-20_002600]]
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** 1 L-arogenate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 prephenate[c] '''+''' 1 L-glutamate[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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== Pathways  ==
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* [[2TRANSKETO-RXN]]
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* [[PWY-6120]], L-tyrosine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6120 PWY-6120]
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** 1 associated gene(s):
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Ec-20_002600]]
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* [[PWY-3462]], L-phenylalanine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3462 PWY-3462]
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** 2 reconstruction source(s) associated:
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-3461]], L-tyrosine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3461 PWY-3461]
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*** [[orthology-aragem]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[6PFRUCTPHOS-RXN]]
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== Reconstruction information  ==
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** 3 associated gene(s):
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* Category: [[gap-filling]]
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*** [[Ec-12_002540]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** [[Ec-22_000070]]
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*** Tool: [[meneco]]
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*** [[Ec-14_003880]]
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**** Comment: [[added for gapfilling]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[F16ALDOLASE-RXN]]
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** 4 associated gene(s):
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*** [[Ec-10_000880]]
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*** [[Ec-10_004980]]
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*** [[Ec-14_001680]]
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*** [[Ec-01_008040]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Ec-08_003540]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBULP3EPIM-RXN]]
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** 2 associated gene(s):
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*** [[Ec-07_002390]]
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*** [[Ec-27_003930]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[TRANSALDOL-RXN]]
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** 2 associated gene(s):
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*** [[Ec-01_002780]]
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*** [[Ec-06_003940]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R12-RXN R12-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: common name=formaldehyde assimilation II (RuMP Cycle)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22880 22880]
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{{#set: common name=ribulose monophosphate cycle|formaldehyde assimilation|RuMP pathway}}
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* LIGAND-RXN:
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{{#set: reaction found=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07276 R07276]
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{{#set: total reaction=9}}
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{{#set: direction=REVERSIBLE}}
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{{#set: completion rate=78.0}}
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{{#set: ec number=EC-2.6.1.79}}
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{{#set: in pathway=PWY-6120|PWY-3462|PWY-3461}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction comment=added for gapfilling}}

Revision as of 13:17, 21 March 2018

Reaction PREPHENATE-TRANSAMINE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-arogenate[c] + 1 2-oxoglutarate[c] <=> 1 prephenate[c] + 1 L-glutamate[c]

Genes associated with this reaction

Pathways

  • PWY-6120, L-tyrosine biosynthesis III: PWY-6120
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3462, L-phenylalanine biosynthesis II: PWY-3462
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-3461, L-tyrosine biosynthesis II: PWY-3461
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




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