Difference between revisions of "SIROHEME"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] == * direction: ** LEFT-TO-RIGHT * common name: ** Di-trans-poly-cis-decaprenylc...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** Di-trans-poly-cis-decaprenylcistransferase
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** gondoate biosynthesis (anaerobic)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.31 EC-2.5.1.31]
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* Synonym(s):
 
* Synonym(s):
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** cis-11-icosenoate biosynthesis
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** (11Z)-icos-11-enoate biosynthesis
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** (11Z)-icosenoate biosynthesis
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** gondoic acid biosynthesis
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** 11-eicosenoic acid biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''4''' reactions in the full pathway
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** 1 [[FARNESYL-PP]][c] '''+''' 8 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c] '''+''' 8 [[PPI]][c]
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* [[RXN-16629]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 8 isopentenyl diphosphate[c] '''=>''' 1 di-trans,octa-cis-undecaprenyl diphosphate[c] '''+''' 8 diphosphate[c]
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*** [[Ec-12_000650]]
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*** [[Ec-12_000640]]
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== Genes associated with this reaction  ==
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*** [[Ec-27_003480]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-27_002090]]
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* [[Ec-05_002690]]
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** 1 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[annotation-esiliculosus_genome]]
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***AUTOMATED-NAME-MATCH
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* [[RXN-16630]]
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** [[pantograph]]-[[aragem]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Ec-01_007100]]
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* [[PWY-5785]], di-trans,poly-cis-undecaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5785 PWY-5785]
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** 1 reconstruction source(s) associated:
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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* [[RXN-16632]]
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* Category: [[orthology]]
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** 1 associated gene(s):
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** Source: [[orthology-aragem]]
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*** [[Ec-27_002470]]
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*** Tool: [[pantograph]]
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** 1 reconstruction source(s) associated:
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* Category: [[annotation]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16631 RXN-16631]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27551 27551]
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{{#set: common name=gondoate biosynthesis (anaerobic)}}
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* LIGAND-RXN:
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{{#set: common name=cis-11-icosenoate biosynthesis|(11Z)-icos-11-enoate biosynthesis|(11Z)-icosenoate biosynthesis|gondoic acid biosynthesis|11-eicosenoic acid biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06447 R06447]
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07269 R07269]
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{{#set: total reaction=4}}
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* UNIPROT:
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{{#set: completion rate=75.0}}
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** [http://www.uniprot.org/uniprot/O82827 O82827]
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** [http://www.uniprot.org/uniprot/O43091 O43091]
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** [http://www.uniprot.org/uniprot/Q9JX35 Q9JX35]
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** [http://www.uniprot.org/uniprot/O67291 O67291]
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** [http://www.uniprot.org/uniprot/Q9X1B8 Q9X1B8]
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** [http://www.uniprot.org/uniprot/O34559 O34559]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Di-trans-poly-cis-decaprenylcistransferase}}
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{{#set: ec number=EC-2.5.1.31}}
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{{#set: gene associated=Ec-05_002690}}
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{{#set: in pathway=PWY-5785}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 13:18, 21 March 2018

Pathway PWY-7663

  • taxonomic range:
  • common name:
    • gondoate biosynthesis (anaerobic)
  • Synonym(s):
    • cis-11-icosenoate biosynthesis
    • (11Z)-icos-11-enoate biosynthesis
    • (11Z)-icosenoate biosynthesis
    • gondoic acid biosynthesis
    • 11-eicosenoic acid biosynthesis

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=SIROHEME&oldid=17460"