Difference between revisions of "Ec-16 002990"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.151-RXN 2.4.1.151-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** galactosyltransfera...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.4.17-RXN 3.1.4.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** RNA ligase/cyclic nuc...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.151-RXN 2.4.1.151-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.4.17-RXN 3.1.4.17-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** galactosyltransferase
+
** RNA ligase/cyclic nucleotide phosphodiesterase
 +
** 3',5'-cyclic-nucleotide phosphodiesterase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.87 EC-2.4.1.87]
+
** [http://enzyme.expasy.org/EC/3.1.4.17 EC-3.1.4.17]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-14553]][c] '''+''' 1 [[B-Gal-14-NacGlc-R]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ALPHA-D-GALACTOSYL-ETCETERA-GLUCOSAMINYL]][c]
+
** 1 [[Cyclic-3-5-Nucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Nucleoside-Monophosphates]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-α-D-galactose[c] '''+''' 1 β-D-galactosyl-(1→4)-N-acetyl-β-D-glucosaminyl-R[c] '''=>''' 1 UDP[c] '''+''' 1 H+[c] '''+''' 1 α-D-galactosyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-D-glucosaminyl-R[c]
+
** 1 a nucleoside cyclic 3',5'-monophosphate[c] '''+''' 1 H2O[c] '''=>''' 1 a nucleoside 5'-monophosphate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-03_002280]]
+
* Gene: [[Ec-14_005050]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: GO-TERM
−
* [[Ec-24_000030]]
+
* Gene: [[Ec-20_000300]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: GO-TERM
−
* [[Ec-26_000190]]
+
* Gene: [[Ec-01_000990]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-01_006680]]
+
* Gene: [[Ec-20_002540]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: GO-TERM
−
* [[Ec-08_004370]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-00_004510]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-14_005280]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7434]], terminal O-glycans residues modification: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7434 PWY-7434]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 47: Line 37:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13013 13013]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14653 14653]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02791 R02791]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03259 R03259]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q28855 Q28855]
+
** [http://www.uniprot.org/uniprot/P12019 P12019]
 +
** [http://www.uniprot.org/uniprot/Q56686 Q56686]
 +
** [http://www.uniprot.org/uniprot/P14099 P14099]
 +
** [http://www.uniprot.org/uniprot/Q01066 Q01066]
 +
** [http://www.uniprot.org/uniprot/Q01061 Q01061]
 +
** [http://www.uniprot.org/uniprot/P14100 P14100]
 +
** [http://www.uniprot.org/uniprot/Q01065 Q01065]
 +
** [http://www.uniprot.org/uniprot/P27815 P27815]
 +
** [http://www.uniprot.org/uniprot/O66909 O66909]
 +
** [http://www.uniprot.org/uniprot/P14270 P14270]
 +
** [http://www.uniprot.org/uniprot/O27755 O27755]
 +
** [http://www.uniprot.org/uniprot/P44685 P44685]
 +
** [http://www.uniprot.org/uniprot/P22434 P22434]
 +
** [http://www.uniprot.org/uniprot/P0AEW4 P0AEW4]
 +
** [http://www.uniprot.org/uniprot/O26280 O26280]
 +
** [http://www.uniprot.org/uniprot/O06629 O06629]
 +
** [http://www.uniprot.org/uniprot/O30241 O30241]
 +
** [http://www.uniprot.org/uniprot/P14644 P14644]
 +
** [http://www.uniprot.org/uniprot/P54748 P54748]
 +
** [http://www.uniprot.org/uniprot/Q13945 Q13945]
 +
** [http://www.uniprot.org/uniprot/Q01062 Q01062]
 +
** [http://www.uniprot.org/uniprot/P54827 P54827]
 +
** [http://www.uniprot.org/uniprot/Q01064 Q01064]
 +
** [http://www.uniprot.org/uniprot/Q9NP56 Q9NP56]
 +
** [http://www.uniprot.org/uniprot/O60658 O60658]
 +
** [http://www.uniprot.org/uniprot/P36599 P36599]
 +
** [http://www.uniprot.org/uniprot/P30645 P30645]
 +
** [http://www.uniprot.org/uniprot/Q45859 Q45859]
 +
** [http://www.uniprot.org/uniprot/P12252 P12252]
 +
** [http://www.uniprot.org/uniprot/P06776 P06776]
 +
** [http://www.uniprot.org/uniprot/Q08493 Q08493]
 +
** [http://www.uniprot.org/uniprot/Q63421 Q63421]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=galactosyltransferase}}
+
{{#set: common name=RNA ligase/cyclic nucleotide phosphodiesterase}}
−
{{#set: ec number=EC-2.4.1.87}}
+
{{#set: common name=3',5'-cyclic-nucleotide phosphodiesterase}}
−
{{#set: gene associated=Ec-03_002280|Ec-24_000030|Ec-26_000190|Ec-01_006680|Ec-08_004370|Ec-00_004510|Ec-14_005280}}
+
{{#set: ec number=EC-3.1.4.17}}
−
{{#set: in pathway=PWY-7434}}
+
{{#set: gene associated=Ec-14_005050|Ec-20_000300|Ec-01_000990|Ec-20_002540}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:18, 21 March 2018

Reaction 3.1.4.17-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • RNA ligase/cyclic nucleotide phosphodiesterase
    • 3',5'-cyclic-nucleotide phosphodiesterase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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