Difference between revisions of "PWY-5353"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10780 RXN-10780] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Gene == Gene Ec-05_000950 == * left end position: ** 2071506 * transcription direction: ** POSITIVE * right end position: ** 2084568 * centisome position: ** 22.7...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10780 RXN-10780] ==
+
== Gene Ec-05_000950 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 2071506
−
* ec number:
+
* transcription direction:
−
** [http://enzyme.expasy.org/EC/1.2.1.3 EC-1.2.1.3]
+
** POSITIVE
 +
* right end position:
 +
** 2084568
 +
* centisome position:
 +
** 22.755041   
 
* Synonym(s):
 
* Synonym(s):
 +
** Esi_0169_0029
 +
** Esi0169_0029
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[5-NUCLEOTID-RXN]]
−
** 1 [[WATER]][c] '''+''' 1 [[5-HYDROXYINDOLE_ACETALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[5-HYDROXYINDOLE_ACETATE]][c]
+
** Source: [[annotation-esiliculosus_genome]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 H2O[c] '''+''' 1 5-hydroxyindole acetaldehyde[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 5-hydroxyindole acetate[c]
+
* Reaction: [[AMP-DEPHOSPHORYLATION-RXN]]
−
 
+
** Source: [[annotation-esiliculosus_genome]]
−
== Genes associated with this reaction  ==
+
*** Assignment: automated-name-match
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN-14025]]
−
* [[Ec-11_002450]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** [[pantograph]]-[[aragem]]
+
*** Assignment: automated-name-match
−
== Pathways ==
+
* Reaction: [[RXN-14026]]
−
* [[PWY-6313]], serotonin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6313 PWY-6313]
+
** Source: [[annotation-esiliculosus_genome]]
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
*** Assignment: automated-name-match
−
== Reconstruction information  ==
+
* Reaction: [[RXN-14227]]
−
* Category: [[orthology]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** Source: [[orthology-aragem]]
+
*** Assignment: automated-name-match
−
*** Tool: [[pantograph]]
+
* Reaction: [[RXN-5841]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: automated-name-match
 +
* Reaction: [[RXN-7607]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: automated-name-match
 +
* Reaction: [[RXN-7609]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: automated-name-match
 +
* Reaction: [[XMPXAN-RXN]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: automated-name-match
 +
== Pathways associated ==
 +
* [[PWY-5381]]
 +
* [[PWY-6607]]
 +
* [[PWY-7185]]
 +
* [[SALVADEHYPOX-PWY]]
 +
* [[PWY-6596]]
 +
* [[NAD-BIOSYNTHESIS-II]]
 +
* [[PWY-6606]]
 +
* [[PWY-6608]]
 +
* [[PWY-5695]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=2071506}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31215 31215]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: right end position=2084568}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04903 R04903]
+
{{#set: centisome position=22.755041    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=Esi_0169_0029|Esi0169_0029}}
−
{{#set: ec number=EC-1.2.1.3}}
+
{{#set: reaction associated=5-NUCLEOTID-RXN|AMP-DEPHOSPHORYLATION-RXN|RXN-14025|RXN-14026|RXN-14227|RXN-5841|RXN-7607|RXN-7609|XMPXAN-RXN}}
−
{{#set: gene associated=Ec-11_002450}}
+
{{#set: pathway associated=PWY-5381|PWY-6607|PWY-7185|SALVADEHYPOX-PWY|PWY-6596|NAD-BIOSYNTHESIS-II|PWY-6606|PWY-6608|PWY-5695}}
−
{{#set: in pathway=PWY-6313}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Revision as of 13:18, 21 March 2018

Gene Ec-05_000950

  • left end position:
    • 2071506
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2084568
  • centisome position:
    • 22.755041
  • Synonym(s):
    • Esi_0169_0029
    • Esi0169_0029

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5353&oldid=17486"