Difference between revisions of "Ec-21 001490"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen oxidase,...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7648 RXN-7648] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7648 RXN-7648] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** coproporphyrinogen oxidase, putative chloroplast precursor
 
−
** coproporphyrinogen oxidase (aerobic), putative chloroplast precursor
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
+
** [http://enzyme.expasy.org/EC/1.14.11.9 EC-1.14.11.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[WATER]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-6991]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CPD-6992]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 H+[c] '''+''' 1 oxygen[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 H2O[c] '''+''' 2 CO2[c] '''+''' 1 protoporphyrinogen IX[c]
+
** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 (2S)-pinocembrin[c] '''=>''' 1 succinate[c] '''+''' 1 (+)-pinobanksin[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-19_005390]]
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* Gene: [[Ec-19_002750]]
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** ESILICULOSUS_GENOME
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** Source: [[orthology-aragem]]
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***EC-NUMBER
+
* Gene: [[Ec-19_002760]]
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** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
* [[Ec-08_001470]]
+
* Gene: [[Ec-08_003510]]
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** ESILICULOSUS_GENOME
+
** Source: [[orthology-aragem]]
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
* [[PWY-5059]], pinobanksin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5059 PWY-5059]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07993 R07993]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
+
−
** [http://www.uniprot.org/uniprot/P36552 P36552]
+
−
** [http://www.uniprot.org/uniprot/O25376 O25376]
+
−
** [http://www.uniprot.org/uniprot/P36553 P36553]
+
−
** [http://www.uniprot.org/uniprot/P33771 P33771]
+
−
** [http://www.uniprot.org/uniprot/P43899 P43899]
+
−
** [http://www.uniprot.org/uniprot/O25824 O25824]
+
−
** [http://www.uniprot.org/uniprot/P54304 P54304]
+
−
** [http://www.uniprot.org/uniprot/P11353 P11353]
+
−
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
+
−
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
+
−
** [http://www.uniprot.org/uniprot/P36551 P36551]
+
−
** [http://www.uniprot.org/uniprot/P35055 P35055]
+
−
** [http://www.uniprot.org/uniprot/P43898 P43898]
+
−
** [http://www.uniprot.org/uniprot/P72848 P72848]
+
−
** [http://www.uniprot.org/uniprot/P73245 P73245]
+
−
** [http://www.uniprot.org/uniprot/P74132 P74132]
+
−
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
+
−
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
+
−
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
+
−
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
+
−
** [http://www.uniprot.org/uniprot/P95651 P95651]
+
−
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=coproporphyrinogen oxidase, putative chloroplast precursor}}
+
{{#set: ec number=EC-1.14.11.9}}
−
{{#set: common name=coproporphyrinogen oxidase (aerobic), putative chloroplast precursor}}
+
{{#set: gene associated=Ec-19_002750|Ec-19_002760|Ec-08_003510}}
−
{{#set: ec number=EC-1.3.3.3}}
+
{{#set: in pathway=PWY-5059}}
−
{{#set: gene associated=Ec-19_005390|Ec-08_001470}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
+
{{#set: reconstruction source=orthology-aragem}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 13:21, 21 March 2018

Reaction RXN-7648

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5059, pinobanksin biosynthesis: PWY-5059
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-21_001490&oldid=17915"