Difference between revisions of "Ec-14 004920"

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(Created page with "Category:Gene == Gene Ec-28_001820 == * left end position: ** 1582175 * transcription direction: ** NEGATIVE * right end position: ** 1596851 * centisome position: ** 41.7...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-28_001820 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] ==
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* left end position:
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* direction:
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** 1582175
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
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* right end position:
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* ec number:
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** 1596851
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** [http://enzyme.expasy.org/EC/2.5.1.21 EC-2.5.1.21]
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* centisome position:
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** 41.75684   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0033_0025
 
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** Esi0033_0025
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[2.5.1.58-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 2 [[FARNESYL-PP]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[SQUALENE]][c] '''+''' 2 [[PPI]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
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***automated-name-match
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* With common name(s):
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* [[RXN-17573]]
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** 2 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 NAD(P)H[c] '''+''' 1 H+[c] '''=>''' 1 squalene[c] '''+''' 2 diphosphate[c] '''+''' 1 NAD(P)+[c]
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** esiliculosus_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-11_001030]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-5670]], epoxysqualene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5670 PWY-5670]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1582175}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32302 32302]
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{{#set: right end position=1596851}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32296 32296]
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{{#set: centisome position=41.75684    }}
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* LIGAND-RXN:
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{{#set: common name=Esi_0033_0025|Esi0033_0025}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06223 R06223]
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{{#set: reaction associated=2.5.1.58-RXN|RXN-17573}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}}
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{{#set: ec number=EC-2.5.1.21}}
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{{#set: gene associated=Ec-11_001030}}
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{{#set: in pathway=PWY-5670}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:24, 21 March 2018

Reaction RXN-13162

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5670, epoxysqualene biosynthesis: PWY-5670
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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