Difference between revisions of "PWY-6453"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1961 RXN-1961] == * direction: ** LEFT-TO-RIGHT * common name: ** tRNA(Ile)-lysidine/2-thiocyti...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1961 RXN-1961] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294] ==
* direction:
+
* taxonomic range:
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
** tRNA(Ile)-lysidine/2-thiocytidine synthase
+
** xylose degradation IV
* ec number:
+
** [http://enzyme.expasy.org/EC/6.3.4.19 EC-6.3.4.19]
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
+
== Reaction(s) found ==
* With identifiers:
+
'''3''' reactions found over '''7''' reactions in the full pathway
** 1 [[LYS]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[Cytidine-34-tRNAIle2]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Lysidine-tRNA-Ile2]][c]
+
* [[GLYCOLATE-REDUCTASE-RXN]]
* With common name(s):
+
** 0 associated gene:
** 1 L-lysine[c] '''+''' 1 ATP[c] '''+''' 1 a cytidine34 in tRNAIle2[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 2 H+[c] '''+''' 1 a lysidine34 in tRNAIle2[c]
+
** 1 reconstruction source(s) associated:
 
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
== Genes associated with this reaction  ==
+
* [[MALSYN-RXN]]
Genes have been associated with this reaction based on different elements listed below.
+
** 1 associated gene(s):
* [[Ec-00_002670]]
+
*** [[Ec-12_003860]]
** ESILICULOSUS_GENOME
+
** 2 reconstruction source(s) associated:
***AUTOMATED-NAME-MATCH
+
*** [[annotation-esiliculosus_genome]]
== Pathways  ==
+
*** [[orthology-aragem]]
== Reconstruction information  ==
+
* [[RXN-14642]]
* Category: [[annotation]]
+
** 0 associated gene:
** Source: [[annotation-esiliculosus_genome]]
+
** 1 reconstruction source(s) associated:
*** Tool: [[pathwaytools]]
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=4.1.2.28-RXN 4.1.2.28-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12246 RXN-12246]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14641 RXN-14641]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=XYLONATE-DEHYDRATASE-RXN XYLONATE-DEHYDRATASE-RXN]
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2157}}
** [http://www.genome.jp/dbget-bin/www_bget?R09597 R09597]
+
{{#set: common name=xylose degradation IV}}
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction found=3}}
{{#set: common name=tRNA(Ile)-lysidine/2-thiocytidine synthase}}
+
{{#set: total reaction=7}}
{{#set: ec number=EC-6.3.4.19}}
+
{{#set: completion rate=43.0}}
{{#set: gene associated=Ec-00_002670}}
+
{{#set: in pathway=}}
+
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 14:27, 21 March 2018

Pathway PWY-7294

  • taxonomic range:
  • common name:
    • xylose degradation IV
  • Synonym(s):

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links