Difference between revisions of "VALSYN-PWY"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** methylerythritol phosphate pathway I
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** Dihydroxy-acid/6-phosphogluconate dehydratase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.9 EC-4.2.1.9]
 
* Synonym(s):
 
* Synonym(s):
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** nonmevalonate isopentenyl diphosphate biosynthesis
 
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** methylerythritol phosphate degradation
 
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** MEP degradation
 
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** deoxyxylulose phosphate pathway
 
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** DOXP pathway
 
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** Rohmer pathway
 
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** isopentenyl diphosphate biosynthesis -- mevalonate-independent
 
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** nonmevalonate isoprenoid pathway
 
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** MEP pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''8''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[2.7.1.148-RXN]]
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** 1 [[CPD-13357]][c] '''=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-10_001370]]
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** 1 (2R)-2,3-dihydroxy-3-methylbutanoate[c] '''=>''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[2.7.7.60-RXN]]
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* Gene: [[Ec-03_000220]]
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** 1 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-12_008050]]
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
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*** [[annotation-esiliculosus_genome]]
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== Pathways  ==
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* [[DXPREDISOM-RXN]]
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* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
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** 1 associated gene(s):
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** [[Ec-12_007940]]
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* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7111 PWY-7111]
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** 2 reconstruction source(s) associated:
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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*** [[orthology-aragem]]
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* Category: [[orthology]]
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* [[DXS-RXN]]
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** Source: [[orthology-aragem]]
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** 1 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[Ec-15_004230]]
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* Category: [[annotation]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-aragem]]
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* [[IPPISOM-RXN]]
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** 2 associated gene(s):
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*** [[Ec-11_001030]]
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*** [[Ec-18_002690]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[ISPH2-RXN]]
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** 1 associated gene(s):
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*** [[Ec-06_002680]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN0-302]]
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** 1 associated gene(s):
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*** [[Ec-25_000990]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN0-884]]
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** 1 associated gene(s):
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*** [[Ec-06_002680]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15878 RXN-15878]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** [http://www.genome.jp/dbget-bin/www_bget?R04441 R04441]
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* ARACYC:
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* UNIPROT:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** [http://www.uniprot.org/uniprot/P55186 P55186]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
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{{#set: common name=methylerythritol phosphate pathway I}}
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** [http://www.uniprot.org/uniprot/P05791 P05791]
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{{#set: common name=nonmevalonate isopentenyl diphosphate biosynthesis|methylerythritol phosphate degradation|MEP degradation|deoxyxylulose phosphate pathway|DOXP pathway|Rohmer pathway|isopentenyl diphosphate biosynthesis -- mevalonate-independent|nonmevalonate isoprenoid pathway|MEP pathway}}
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** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
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{{#set: reaction found=8}}
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** [http://www.uniprot.org/uniprot/P44851 P44851]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/Q02139 Q02139]
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{{#set: completion rate=89.0}}
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** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
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** [http://www.uniprot.org/uniprot/P39522 P39522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Dihydroxy-acid/6-phosphogluconate dehydratase}}
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{{#set: ec number=EC-4.2.1.9}}
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{{#set: gene associated=Ec-03_000220}}
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{{#set: in pathway=VALSYN-PWY|PWY-7111}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:28, 21 March 2018

Reaction DIHYDROXYISOVALDEHYDRAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Dihydroxy-acid/6-phosphogluconate dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2R)-2,3-dihydroxy-3-methylbutanoate[c] => 1 3-methyl-2-oxobutanoate[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • VALSYN-PWY, L-valine biosynthesis: VALSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7111, pyruvate fermentation to isobutanol (engineered): PWY-7111
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=VALSYN-PWY&oldid=18957"