Difference between revisions of "RXN-12789"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7088 TAX-70...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxamine kinase * ec nu...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7088 TAX-7088]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** (8E,10E)-dodeca-8,10-dienol biosynthesis
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** Pyridoxamine kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''5''' reactions found over '''11''' reactions in the full pathway
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* With identifiers:
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* [[RXN-12507]]
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** 1 [[PYRIDOXINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PYRIDOXINE-5P]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-14_006530]]
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** 1 pyridoxine[c] '''+''' 1 ATP[c] '''=>''' 1 pyridoxine 5'-phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-14268]]
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* Gene: [[Ec-02_001230]]
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** 1 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-26_003940]]
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
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*** [[orthology-aragem]]
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== Pathways  ==
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* [[RXN-14271]]
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* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
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** 1 associated gene(s):
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** '''5''' reactions found over '''9''' reactions in the full pathway
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*** [[Ec-14_006530]]
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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** 2 reconstruction source(s) associated:
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** '''5''' reactions found over '''9''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
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*** [[orthology-aragem]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[RXN-14272]]
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== Reconstruction information  ==
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** 4 associated gene(s):
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* Category: [[orthology]]
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*** [[Ec-16_001250]]
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** Source: [[orthology-aragem]]
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*** [[Ec-16_003560]]
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*** Tool: [[pantograph]]
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*** [[Ec-14_006530]]
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* Category: [[annotation]]
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*** [[Ec-06_001380]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-14273]]
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** 4 associated gene(s):
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*** [[Ec-14_006530]]
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*** [[Ec-06_001380]]
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*** [[Ec-16_001250]]
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*** [[Ec-16_003560]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.155-RXN 2.3.1.155-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14131 RXN-14131]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16540 RXN-16540]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16541 RXN-16541]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16542 RXN-16542]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16543 RXN-16543]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-7088}}
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* RHEA:
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{{#set: common name=(8E,10E)-dodeca-8,10-dienol biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25108 25108]
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{{#set: reaction found=5}}
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* LIGAND-RXN:
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{{#set: total reaction=11}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01909 R01909]
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{{#set: completion rate=45.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Pyridoxamine kinase}}
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{{#set: ec number=EC-2.7.1.35}}
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{{#set: gene associated=Ec-02_001230}}
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{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:30, 21 March 2018

Reaction PNKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyridoxamine kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyridoxine[c] + 1 ATP[c] => 1 pyridoxine 5'-phosphate[c] + 1 ADP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants): PWY-7204
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 5 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I: PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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